NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17392.1 Public Mus musculus 3 Ptx3 23 108 98 CCDS HistoryNCBI Gene:19288Re-query CCDS DB by CCDS ID:17392.1Re-query CCDS DB by GeneID:19288See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029421.5 ENSMUSP00000029421.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029421.5Link to Ensembl Protein Viewer:ENSMUSP00000029421.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029421Re-query CCDS DB by Protein ID:ENSMUSP00000029421
Original member Current member NCBI NM_008987.3 NP_033013.3 Accepted alive Link to Nucleotide Sequence:NM_008987.3Link to Protein Sequence:NP_033013.3Re-query CCDS DB by Nucleotide ID:NM_008987Re-query CCDS DB by Protein ID:NP_033013Link to BLAST:NP_033013.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033013.3 381 P48759 381 100% 0 0

Chromosomal Locations for CCDS 17392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66220062 66220191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66220650 66221051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66224592 66225205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGCACCTCCCTGCGATCCTGCTTTGTGCTCTCTGGTCTGCAGTAGTGGCTGAGACCTCGGATGACTACG
AGCTCATGTATGTGAATTTGGACAACGAAATAGACAATGGACTTCATCCCACCGAGGACCCCACGCCATG
CGACTGCCGCCAGGAGCACTCGGAGTGGGACAAGCTGTTCATCATGCTGGAGAACTCGCAGATGCGGGAG
GGCATGCTGTTGCAGGCCACCGACGACGTCCTCCGTGGAGAGCTGCAGCGGCTGCGGGCAGAGCTGGGGC
GGCTGGCGGGCGGCATGGCGAGGCCGTGCGCAGCCGGTGGCCCCGCAGACGCCAGGCTGGTGCGGGCGCT
GGAGCCGCTGCTGCAGGAGAGCCGTGACGCGAGCCTCAGGCTGGCGCGCCTGGAGGACGCGGAGGCGCGG
CGACCCGAGGCGACAGTGCCTGGCCTAGGCGCTGTGCTGGAGGAACTGCGGCGGACGCGCGCCGACCTGA
GCGCCGTGCAGAGCTGGGTCGCCCGCCACTGGCTGCCCGCAGGTTGTGAAACAGCAATTTTCTTCCCAAT
GCGTTCGAAGAAGATTTTTGGAAGCGTGCATCCTGTGAGACCAATGAAGCTTGAATCTTTTAGTACTTGC
ATTTGGGTCAAAGCCACAGATGTATTAAACAAAACCATCCTGTTTTCTTATGGCACAAAGTGGAACCCCT
ATGAGATTCAGCTGTACCTCAGTTCCCAGTCCCTAGTGTTGGTGGTGGGTGGAAAGGAGAACAAGCTGGC
TGCAGACACTGTGGTGTCCCTGGGGAGGTGGTCCCACCTGTGTGGCACCTGGAGTTCAGAGCAGGGGAGC
ATGTCCCTGTGGGCAAACGGGGAGCTGGTGGCTACCACTGTAGAGATGGCCAAAAGTCACTCTGTTCCTG
AGGGTGGACTCCTACAGATTGGCCAAGAAAAGAATGGTTGCTGTGTAGGTGGGGGCTTTGACGAATCATT
AGCATTTTCTGGAAGAATCACAGGCTTCAATATCTGGGATCGGGTTCTCAGCGAGGAGGAGATACGGGCC
AGTGGAGGAGTCGAATCCTGTCACATCCGGGGAAATGTCGTCGGGTGGGGAGTCACAGAGATTCAGGCGC
ACGGAGGAGCCCAGTATGTTTCTTAA

Translation (381 aa):
MHLPAILLCALWSAVVAETSDDYELMYVNLDNEIDNGLHPTEDPTPCDCRQEHSEWDKLFIMLENSQMRE
GMLLQATDDVLRGELQRLRAELGRLAGGMARPCAAGGPADARLVRALEPLLQESRDASLRLARLEDAEAR
RPEATVPGLGAVLEELRRTRADLSAVQSWVARHWLPAGCETAIFFPMRSKKIFGSVHPVRPMKLESFSTC
IWVKATDVLNKTILFSYGTKWNPYEIQLYLSSQSLVLVVGGKENKLAADTVVSLGRWSHLCGTWSSEQGS
MSLWANGELVATTVEMAKSHSVPEGGLLQIGQEKNGCCVGGGFDESLAFSGRITGFNIWDRVLSEEEIRA
SGGVESCHIRGNVVGWGVTEIQAHGGAQYVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH