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Report for CCDS48462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48462.1 Public Mus musculus 1 Spmip3 23 108 98 CCDS HistoryNCBI Gene:69428Re-query CCDS DB by CCDS ID:48462.1Re-query CCDS DB by GeneID:69428See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016106.5 ENSMUSP00000016106.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016106.5Link to Ensembl Protein Viewer:ENSMUSP00000016106.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000016106Re-query CCDS DB by Protein ID:ENSMUSP00000016106
Original member Current member NCBI NM_027077.2 NP_081353.1 Accepted alive Link to Nucleotide Sequence:NM_027077.2Link to Protein Sequence:NP_081353.1Re-query CCDS DB by Nucleotide ID:NM_027077Re-query CCDS DB by Protein ID:NP_081353Link to BLAST:NP_081353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081353.1 145 Q9DAA7 145 100% 0 0

Chromosomal Locations for CCDS 48462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 177733497 177733552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177740995 177741090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177743254 177743426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177752916 177753028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGTCGACCATCCGACTACGAGAATTTGTAGAGCGTCGCCCATCGATTCCACCTAGGCTATATATCACTC
ACCAAGGAAGGGACATCAAAGGCTATTACCCTGGACAACTGGCAAGACTCCATTTTGATTACAGTGGGAG
GAAGGCTCCAAGACCCCTTATAGACTTGACAATTCCACTCAAGAGCACAACTCCGTATCAGCCTCAATTA
GACCAGCAAACGCTCATTCGAAGCATTTGTTCAAGAAGATTGTCAAGGCCTACAGACTTGTGGCATAATG
AAACATCTTACCAAAGAGACTACTCCCTGCCATTTTATGAGAGTGGTTGGGATCGGAAATTAGGCACGAT
TTCATTGCATCCTAGACCAGTTAATTCAGTACCAGAAGTCTACTGCTGTGGTGGTGAGAGAAGCAGCTAT
GCAAGAAGCACTTTTTAA

Translation (145 aa):
MSTIRLREFVERRPSIPPRLYITHQGRDIKGYYPGQLARLHFDYSGRKAPRPLIDLTIPLKSTTPYQPQL
DQQTLIRSICSRRLSRPTDLWHNETSYQRDYSLPFYESGWDRKLGTISLHPRPVNSVPEVYCCGGERSSY
ARSTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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