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Report for CCDS5208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5208.1 Public Homo sapiens 6 FBXO30 24 110 108 CCDS HistoryNCBI Gene:84085Re-query CCDS DB by CCDS ID:5208.1Re-query CCDS DB by GeneID:84085See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237281.5 ENSP00000237281.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237281.5Link to Ensembl Protein Viewer:ENSP00000237281.3Re-query CCDS DB by Nucleotide ID:ENST00000237281Re-query CCDS DB by Protein ID:ENSP00000237281
Original member Current member NCBI NM_001348092.2 NP_001335021.1 Accepted alive Link to Nucleotide Sequence:NM_001348092.2Link to Protein Sequence:NP_001335021.1Re-query CCDS DB by Nucleotide ID:NM_001348092Re-query CCDS DB by Protein ID:NP_001335021Link to BLAST:NP_001335021.1
Original member Current member NCBI NM_032145.5 NP_115521.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032145.5Link to Protein Sequence:NP_115521.3Re-query CCDS DB by Nucleotide ID:NM_032145Re-query CCDS DB by Protein ID:NP_115521Link to BLAST:NP_115521.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335021.1 745 Q8TB52 745 100% 0 0
NP_115521.3 745 Q8TB52 745 100% 0 0

Chromosomal Locations for CCDS 5208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145800106 145800309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145804372 145806405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGGAGGAGGAGCTGCAGCATTCCCATTGTGTGAATTGTGTCAGTAGACGGTGCATGACCAGGCCAGAGC
CAGGGATTTCCTGTGATTTGATTGGTTGTCCATTGGTTTGTGGTGCAGTTTTCCATTCTTGTAAAGCTGA
TGAGCATCGACTTTTATGTCCATTTGAACGAGTGCCTTGCTTAAATAGTGACTTTGGATGTCCATTTACC
ATGGCCCGAAATAAAGTTGCTGAACATCTAGAAATGTGTCCTGCAAGTGTGGTGTGCTGTACTATGGAAT
GGAATCGATGGCCAGTTAGTTATGCAGACCGGAAATCATATGAAAATCTAAGCAGAGATGTCGATGAAGT
GGCACAATTGGATATGGCCTTGGCTCTTCAAGACCAAAGGATGCTCTTAGAATCCCTCAAAGTAGCCACC
ATGATGTCAAAAGCAACTGATAAAGTATCCAAACCTAGAGAACAAATCTCAGTTAAATCAAGTGTCCCAG
AAATACCACATGCTAATGGTTTAGTGTCTGTTGATGAAGAATCTTATGGTGCACTTTATCAAGCTACTGT
AGAAACAACCAGAAGTTTGGCTGCTGCTTTGGATATCCTGAATACTGCTACAAGAGACATTGGCATGTTA
AATACAAGTGTCCCAAATGACATGGATGAACAGCAAAATGCGAGAGAAAGCTTAGAGGATCAAAACTTGA
AAGACCAAGATCATCTTTATGAGGAGGAAATAGGAGCAGTAGGTGGAATTGACTACAATGACACAAATCA
GAATGCCCAGTCTGAACAAAATGGTTCAAGTGATTTATTATGTGACTTGAATACAAGTTCTTATGACACT
TCTGCTCTTTGTAATGGCTTTCCTTTGGAAAATATATGTACCCAGGTCATAGACCAGAATCAGAATTTAC
ATGGTGATTCAAAACAAAGTAACTTAACAAATGGAGACTGTGTGGCATCATCAGATGGCACTTCAAAACC
TTCCAGCTCACTTGCGGTGGCAGCACAACTTAGGGAAATAATACCATCCAGTGCTTTGCCTAATGGCACA
GTTCAGCATATCCTCATGCCAGATGATGAAGGTGAAGGTGAATTGTGTTGGAAAAAAGTAGACTTAGGGG
ACGTGAAGAATGTGGATGTCTTATCTTTCAGTCATGCTCCTTCATTCAATTTTCTTTCTAATTCATGTTG
GTCTAAACCAAAGGAAGATAAAGCAGTAGATACATCAGATTTGGAAGTTGCAGAAGATCCTATGGGCCTC
CAAGGAATAGATCTGATCACAGCAGCATTGCTTTTTTGTCTAGGAGATTCTCCAGGAGGGAGGGGTATAT
CTGATAGCCGCATGGCTGATATTTATCACATTGACGTTGGGACTCAGACTTTTTCACTTCCATCTGCAAT
ATTAGCTACAAGTACAATGGTTGGGGAGATAGCTTCAGCTTCAGCTTGTGATCATGCCAATCCACAGCTT
TCAAATCCAAGTCCGTTTCAGACACTTGGGCTGGATTTAGTATTGGAATGTGTCGCTAGGTACCAACCCA
AGCAGCGTTCAATGTTTACCTTTGTGTGTGGACAGTTATTTAGAAGGAAAGAATTTTCTTCCCACTTTAA
GAATGTGCATGGTGACATTCATGCTGGACTCAATGGCTGGATGGAACAGAGGTGCCCTTTAGCTTACTAT
GGTTGTACCTATTCTCAGCGTAGATTTTGTCCATCAATACAAGGAGCAAAGATTATACATGACCGCCATT
TGAGGTCATTTGGAGTTCAGCCATGTGTATCTACAGTATTAGTGGAGCCTGCTAGAAACTGTGTGTTGGG
ATTACATAATGACCATCTAAGTAGTCTTCCTTTTGAGGTCCTGCAGCATATTGCAGGCTTTCTCGATGGC
TTCAGCTTATGTCAGCTCTCATGTGTATCCAAGTTAATGAGGGATGTGTGTGGCAGCCTGCTTCAGTCTC
GTGGCATGGTCATACTGCAGTGGGGGAAAAGGAAGTATCCAGAAGGAAATTCATCATGGCAGATAAAAGA
AAAGGTATGGCGATTTAGTACTGCATTTTGTTCTGTTAATGAATGGAAATTTGCTGACATCCTAAGCATG
GCAGACCACTTGAAGAAATGCAGTTACAATGTTGTCGAGAAACGGGAGGAAGCAATCCCTTTGCCATGTA
TGTGTGTGACACGAGAACTCACTAAAGAAGGACGTTCACTACGCTCAGTTTTAAAACCTGTACTTTAA

Translation (745 aa):
MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFT
MARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQLDMALALQDQRMLLESLKVAT
MMSKATDKVSKPREQISVKSSVPEIPHANGLVSVDEESYGALYQATVETTRSLAAALDILNTATRDIGML
NTSVPNDMDEQQNARESLEDQNLKDQDHLYEEEIGAVGGIDYNDTNQNAQSEQNGSSDLLCDLNTSSYDT
SALCNGFPLENICTQVIDQNQNLHGDSKQSNLTNGDCVASSDGTSKPSSSLAVAAQLREIIPSSALPNGT
VQHILMPDDEGEGELCWKKVDLGDVKNVDVLSFSHAPSFNFLSNSCWSKPKEDKAVDTSDLEVAEDPMGL
QGIDLITAALLFCLGDSPGGRGISDSRMADIYHIDVGTQTFSLPSAILATSTMVGEIASASACDHANPQL
SNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYY
GCTYSQRRFCPSIQGAKIIHDRHLRSFGVQPCVSTVLVEPARNCVLGLHNDHLSSLPFEVLQHIAGFLDG
FSLCQLSCVSKLMRDVCGSLLQSRGMVILQWGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSM
ADHLKKCSYNVVEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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