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Report for CCDS30676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30676.1 Public Homo sapiens 1 MTF1 24 110 108 CCDS HistoryNCBI Gene:4520Re-query CCDS DB by CCDS ID:30676.1Re-query CCDS DB by GeneID:4520See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373036.5 ENSP00000362127.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373036.5Link to Ensembl Protein Viewer:ENSP00000362127.3Re-query CCDS DB by Nucleotide ID:ENST00000373036Re-query CCDS DB by Protein ID:ENSP00000362127
Original member Current member NCBI NM_005955.3 NP_005946.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005955.3Link to Protein Sequence:NP_005946.2Re-query CCDS DB by Nucleotide ID:NM_005955Re-query CCDS DB by Protein ID:NP_005946Link to BLAST:NP_005946.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005946.2 753 Q14872 753 100% 0 0

Chromosomal Locations for CCDS 30676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37815136 37815566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37817419 37817482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37822121 37822716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37823710 37823812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37832245 37832322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37835079 37835215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37835671 37835744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37838625 37838756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37839920 37840158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37857251 37857658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGGGGGAACACAGTCCAGACAACAACATCATCTACTTTGAGGCAGAGGAAGATGAGCTGACCCCCGATG
ATAAAATGCTCAGGTTTGTGGATAAAAACGGACTGGTGCCTTCCTCATCTGGAACTGTTTATGATAGGAC
CACTGTTCTTATTGAGCAGGACCCTGGCACTTTGGAGGATGAAGATGACGACGGACAGTGCGGAGAACAC
TTGCCTTTTCTAGTAGGGGGTGAAGAGGGCTTTCACCTGATAGATCATGAAGCAATGTCCCAGGGTTATG
TGCAGCACATTATCTCACCAGATCAGATTCATTTGACAATAAACCCTGGTTCCACACCCATGCCAAGAAA
TATTGAAGGTGCAACCCTCACTCTGCAGTCGGAATGTCCGGAAACAAAACGTAAAGAAGTAAAGCGGTAC
CAATGTACCTTTGAGGGCTGTCCCCGCACCTACAGCACAGCAGGCAACCTGCGAACCCACCAGAAGACTC
ACCGAGGAGAGTACACCTTTGTCTGTAATCAGGAGGGCTGTGGCAAAGCCTTCCTTACCTCTTACAGCCT
CAGGATCCACGTGCGAGTGCACACGAAGGAGAAGCCATTTGAGTGTGACGTGCAGGGCTGTGAGAAGGCA
TTCAACACACTGTACAGGCTGAAAGCACATCAGAGGCTTCACACAGGGAAAACGTTTAACTGTGAATCTG
AAGGCTGCAGCAAATACTTCACCACACTCAGTGATCTGAGGAAGCACATTCGAACTCATACAGGGGAAAA
GCCATTTCGGTGCGATCACGATGGCTGTGGAAAAGCATTTGCAGCAAGCCACCACCTTAAAACTCACGTT
CGTACACATACTGGTGAAAGACCCTTCTTCTGCCCCAGTAATGGCTGTGAGAAAACATTCAGCACTCAAT
ACAGTCTCAAAAGTCACATGAAAGGTCATGATAACAAAGGACACTCATACAATGCACTTCCACAACACAA
TGGATCAGAGGATACAAATCACTCACTTTGTCTAAGTGACTTGAGCCTTCTGTCCACAGATTCTGAATTG
CGAGAAAATTCCAGTACGACCCAGGGCCAGGACCTCAGCACAATTTCACCAGCAATCATCTTTGAATCAA
TGTTCCAGAATTCAGATGATACGGCAATTCAGGAAGATCCTCAACAGACAGCTTCCTTGACTGAAAGTTT
TAATGGTGATGCAGAGTCAGTCAGTGATGTTCCGCCATCCACAGGAAATTCAGCATCTTTATCTCTTCCA
CTTGTACTGCAACCTGGCCTCTCCGAGCCACCCCAGCCTCTACTACCTGCCTCAGCTCCGTCTGCTCCTC
CGCCTGCTCCCTCCCTAGGACCTGGCTCCCAGCAAGCTGCATTTGGCAACCCCCCTGCTCTCTTACAACC
TCCAGAAGTGCCTGTTCCCCACAGCACACAGTTTGCTGCTAATCATCAAGAGTTTCTTCCGCACCCCCAG
GCACCGCAGCCCATTGTACCAGGACTTTCTGTTGTTGCTGGGGCTTCTGCATCAGCAGCGGCAGTGGCAT
CAGCTGTGGCAGCACCAGCCCCACCACAAAGTACTACTGAGCCCCTGCCAGCCATGGTCCAGACTCTGCC
CCTGGGTGCCAACTCTGTCCTAACTAATAATCCCACAATAACCATCACCCCAACTCCCAACACAGCTATC
CTGCAGTCCAGCCTAGTCATGGGAGAACAGAACTTACAATGGATATTAAATGGTGCCACCAGTTCTCCAC
AAAACCAAGAACAAATTCAGCAAGCATCTAAAGTTGAGAAGGTGTTTTTTACCACTGCAGTACCAGTAGC
CAGTAGCCCAGGGAGCTCTGTCCAGCAGATTGGCCTCAGTGTTCCTGTGATCATCATCAAACAAGAAGAG
GCATGTCAGTGTCAGTGTGCATGCCGGGACTCTGCAAAGGAGCGGGCATCCAGCAGGAGAAAGGGCTGCT
CCTCCCCACCCCCTCCAGAGCCGAGCCCCCAGGCTCCTGATGGGCCCAGCCTGCAGCTCCCAGCGCAGAC
TTTCTCTTCAGCCCCTGTTCCCGGGTCATCATCCTCTACCTTGCCCTCCTCCTGTGAGCAAAGCCGACAA
GCAGAGACTCCTTCAGACCCTCAGACAGAAACATTAAGTGCCATGGATGTGTCAGAGTTTCTATCCCTCC
AGAGCCTGGACACCCCGTCCAATCTGATTCCCATTGAAGCACTACTGCAGGGGGAGGAGGAGATGGGCCT
CACCAGCAGCTTCTCCAAGTGA

Translation (753 aa):
MGEHSPDNNIIYFEAEEDELTPDDKMLRFVDKNGLVPSSSGTVYDRTTVLIEQDPGTLEDEDDDGQCGEH
LPFLVGGEEGFHLIDHEAMSQGYVQHIISPDQIHLTINPGSTPMPRNIEGATLTLQSECPETKRKEVKRY
QCTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKAFLTSYSLRIHVRVHTKEKPFECDVQGCEKA
FNTLYRLKAHQRLHTGKTFNCESEGCSKYFTTLSDLRKHIRTHTGEKPFRCDHDGCGKAFAASHHLKTHV
RTHTGERPFFCPSNGCEKTFSTQYSLKSHMKGHDNKGHSYNALPQHNGSEDTNHSLCLSDLSLLSTDSEL
RENSSTTQGQDLSTISPAIIFESMFQNSDDTAIQEDPQQTASLTESFNGDAESVSDVPPSTGNSASLSLP
LVLQPGLSEPPQPLLPASAPSAPPPAPSLGPGSQQAAFGNPPALLQPPEVPVPHSTQFAANHQEFLPHPQ
APQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPLPAMVQTLPLGANSVLTNNPTITITPTPNTAI
LQSSLVMGEQNLQWILNGATSSPQNQEQIQQASKVEKVFFTTAVPVASSPGSSVQQIGLSVPVIIIKQEE
ACQCQCACRDSAKERASSRRKGCSSPPPPEPSPQAPDGPSLQLPAQTFSSAPVPGSSSSTLPSSCEQSRQ
AETPSDPQTETLSAMDVSEFLSLQSLDTPSNLIPIEALLQGEEEMGLTSSFSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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