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Report for CCDS9993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9993.1 Public Homo sapiens 14 SIVA1 24 110 108 CCDS HistoryNCBI Gene:10572Re-query CCDS DB by CCDS ID:9993.1Re-query CCDS DB by GeneID:10572See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347067.9 ENSP00000329447.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347067.9Link to Ensembl Protein Viewer:ENSP00000329447.6Re-query CCDS DB by Nucleotide ID:ENST00000347067Re-query CCDS DB by Protein ID:ENSP00000329447
Original member Current member NCBI NM_021709.3 NP_068355.1 Accepted alive Link to Nucleotide Sequence:NM_021709.3Link to Protein Sequence:NP_068355.1Re-query CCDS DB by Nucleotide ID:NM_021709Re-query CCDS DB by Protein ID:NP_068355Link to BLAST:NP_068355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068355.1 110 O15304-2 110 100% 0 0

Chromosomal Locations for CCDS 9993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 104753202 104753319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104756604 104756760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104759428 104759485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGCCCAAGCGGAGCTGCCCCTTCGCGGACGTGGCCCCGCTACAGCTCAAGGTCCGCGTGAGCCAGAGGG
AGTTGAGCCGCGGCGTGTGCGCCGAGCGCTACTCGCAGGAGGTCTTCGACCCATCTGGGGTAGCGTCCAT
TGCCTGTTCCTCATGCGTGCGAGCCGTGGATGGGAAGGCGGTCTGCGGTCAGTGTGAGCGAGCCCTGTGC
GGGCAGTGTGTGCGCACCTGCTGGGGCTGCGGCTCCGTGGCCTGTACCCTGTGTGGCCTCGTGGACTGCA
GTGACATGTACGAGAAAGTGCTGTGCACCAGCTGTGCCATGTTCGAGACCTGA

Translation (110 aa):
MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFDPSGVASIACSSCVRAVDGKAVCGQCERALC
GQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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