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Report for CCDS9643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9643.1 Public Homo sapiens 14 DTD2 24 110 108 CCDS HistoryNCBI Gene:112487Re-query CCDS DB by CCDS ID:9643.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9643.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310850.9 ENSP00000312224.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310850.9Link to Ensembl Protein Viewer:ENSP00000312224.4Re-query CCDS DB by Nucleotide ID:ENST00000310850Re-query CCDS DB by Protein ID:ENSP00000312224
Original member Current member EBI ENST00000356180.4 ENSP00000348503.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356180.4Link to Ensembl Protein Viewer:ENSP00000348503.4Re-query CCDS DB by Nucleotide ID:ENST00000356180Re-query CCDS DB by Protein ID:ENSP00000348503
Original member Current member NCBI NM_080664.3 NP_542395.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080664.3Link to Protein Sequence:NP_542395.1Re-query CCDS DB by Nucleotide ID:NM_080664Re-query CCDS DB by Protein ID:NP_542395Link to BLAST:NP_542395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542395.1 168 Q96FN9 168 100% 0 0

Chromosomal Locations for CCDS 9643.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31448129 31448454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31453275 31453344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31457283 31457393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGCTGAGGGTAGCCGGATTCCTCAGGCCCGGGCGCTCCTACAGCAGTGCCTGCACGCCCGGCTGCAAA
TTCGCCCAGCCGATGGGGACGTCGCGGCCCAGTGGGTGGAGGTCCAAAGAGGACTGGTGATCTACGTGTG
CTTTTTCAAGGGAGCTGATAAAGAACTTCTTCCCAAAATGGTTAATACACTGTTAAATGTGAAATTAAGT
GAGACAGAAAATGGCAAGCATGTCTCTATATTGGATCTACCTGGCAACATTCTTATTATCCCTCAAGCTA
CCCTTGGAGGAAGACTAAAAGGAAGAAACATGCAATATCACTCTAACTCTGGAAAAGAAGAAGGGTTTGA
ACTTTACTCTCAATTTGTGACTCTATGTGAAAAAGAAGTAGCTGCTAATAGCAAGTGTGCTGAAGCTAGG
GTTGTAGTGGAACATGGCACTTATGGGAACAGGCAGGTGTTAAAGCTGGACACCAACGGACCATTCACAC
ACTTAATTGAGTTTTGA

Translation (168 aa):
MAEGSRIPQARALLQQCLHARLQIRPADGDVAAQWVEVQRGLVIYVCFFKGADKELLPKMVNTLLNVKLS
ETENGKHVSILDLPGNILIIPQATLGGRLKGRNMQYHSNSGKEEGFELYSQFVTLCEKEVAANSKCAEAR
VVVEHGTYGNRQVLKLDTNGPFTHLIEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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