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Report for CCDS25908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25908.1 Public Mus musculus 12 Egln3 23 108 98 CCDS HistoryNCBI Gene:112407Re-query CCDS DB by CCDS ID:25908.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039516.3 ENSMUSP00000041874.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039516.3Link to Ensembl Protein Viewer:ENSMUSP00000041874.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039516Re-query CCDS DB by Protein ID:ENSMUSP00000041874
Original member Current member NCBI NM_028133.2 NP_082409.2 Accepted alive Link to Nucleotide Sequence:NM_028133.2Link to Protein Sequence:NP_082409.2Re-query CCDS DB by Nucleotide ID:NM_028133Re-query CCDS DB by Protein ID:NP_082409Link to BLAST:NP_082409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082409.2 239 Q91UZ4 239 99.5816% 0 1

Chromosomal Locations for CCDS 25908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54180624 54180655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54181631 54181704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54183880 54184016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54185541 54185660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54203205 54203561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGCCTCTGGGACACATCATGAGGCTGGATCTGGAGAAGATCGCCCTGGAGTACATCGTGCCCTGTCTGC
ACGAGGTCGGCTTCTGCTACCTGGACAACTTCCTAGGCGAGGTGGTGGGCGACTGCGTGCTGGAGCGAGT
CAAGCAGCTGCACTACAACGGGGCCCTGCGTGACGGCCAGCTGGCCGGGCCGTGCGCCGGCGTCTCCAAG
CGGCACCTGCGAGGCGACCAGATCACGTGGATCGGGGGCAACGAGGAGGGCTGCGAGGCCATCAACTTCC
TCCTGTCCCTCATCGACCGGCTGGTCCTGTACTGCGGGAGCCGGCTGGGCAAATACTATGTCAAGGAGCG
GTCCAAGGCAATGGTGGCTTGCTATCCAGGAAATGGGACAGGTTATGTTCGCCATGTGGACAACCCCAAT
GGTGATGGCCGCTGTATCACCTGTATCTACTACCTGAATAAGAATTGGGACGCCAAGTTACACGGAGGGG
TCCTGCGGATATTTCCGGAAGGGAAATCGTTTGTAGCAGACGTGGAGCCCATTTTTGACAGACTTCTGTT
CTTCTGGTCAGACCGCAGGAATCCACATGAAGTCCAGCCCTCCTATGCCACCAGGTACGCTATGACTGTC
TGGTACTTCGATGCTGAAGAAAGGGCAGAAGCCAAAAAGAAATTCAGGAATTTAACTAGAAAAACTGAAT
CTGCTCTTGCTAAAGACTGA

Translation (239 aa):
MPLGHIMRLDLEKIALEYIVPCLHEVGFCYLDNFLGEVVGDCVLERVKQLHYNGALRDGQLAGPCAGVSK
RHLRGDQITWIGGNEEGCEAINFLLSLIDRLVLYCGSRLGKYYVKERSKAMVACYPGNGTGYVRHVDNPN
GDGRCITCIYYLNKNWDAKLHGGVLRIFPEGKSFVADVEPIFDRLLFFWSDRRNPHEVQPSYATRYAMTV
WYFDAEERAEAKKKFRNLTRKTESALAKD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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