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Report for CCDS24970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24970.1 Public Mus musculus 11 C1qbp 23 108 98 CCDS HistoryNCBI Gene:12261Re-query CCDS DB by CCDS ID:24970.1Re-query CCDS DB by GeneID:12261See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078528.6 ENSMUSP00000077612.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078528.6Link to Ensembl Protein Viewer:ENSMUSP00000077612.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078528Re-query CCDS DB by Protein ID:ENSMUSP00000077612
Original member Current member NCBI NM_007573.2 NP_031599.2 Accepted alive Link to Nucleotide Sequence:NM_007573.2Link to Protein Sequence:NP_031599.2Re-query CCDS DB by Nucleotide ID:NM_007573Re-query CCDS DB by Protein ID:NP_031599Link to BLAST:NP_031599.2

Chromosomal Locations for CCDS 24970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70978095 70978244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70978428 70978550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70978689 70978784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70980010 70980103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70982170 70982320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70982725 70982950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGCTCCCTCTGCTGCGTTGCGTGCCCCGCGCCCTCGGCGCCGCCGCCTCCGGCCTCCGAACCGCCATCC
CGGCCCAGCCGCTTCGGCATCTCCTGCAGCCCGCGCCCCGGCCATGCCTCCGGCCCTTCGGTTTGCTCAG
CGTACGGGCCGGCTCGGCTCGGCGCTCTGGCCTCCTGCAGCCCCCGGTTCCCTGCGCGTGCGGCTGTGGC
GCTCTGCACACGGAAGGAGACAAGGCCTTCGTTGAATTCTTGACTGATGAAATTAAGGAAGAAAAGAAGA
TCCAGAAACACAAGTCCCTTCCCAAGATGTCTGGAGATTGGGAGCTGGAGGTGAACGGCACGGAGGCTAA
ATTATTGCGCAAAGTTGCCGGAGAAAAGATCACGGTCACTTTCAACATCAACAACAGCATCCCTCCAACA
TTTGATGGTGAGGAGGAGCCCTCACAGGGGCAGAAGGCTGAAGAACAGGAGCCAGAACTGACATCAACTC
CCAACTTTGTGGTTGAAGTTACCAAGACTGATGGCAAGAAGACCCTTGTACTGGACTGTCACTATCCTGA
GGATGAGATTGGACACGAAGATGAGGCCGAGAGTGATATTTTCTCTATCAAGGAAGTTAGCTTTCAGGCC
ACTGGTGACTCTGAGTGGAGGGATACAAACTATACACTCAACACAGATTCCCTGGACTGGGCCTTGTATG
ACCACCTAATGGATTTCCTTGCGGACCGAGGGGTGGATAACACTTTTGCGGATGAGTTGGTGGAGCTCAG
CACAGCCCTGGAGCACCAGGAATATATCACCTTTCTTGAGGACCTCAAAAGCTTTGTCAAGAACCAGTAG

Translation (279 aa):
MLPLLRCVPRALGAAASGLRTAIPAQPLRHLLQPAPRPCLRPFGLLSVRAGSARRSGLLQPPVPCACGCG
ALHTEGDKAFVEFLTDEIKEEKKIQKHKSLPKMSGDWELEVNGTEAKLLRKVAGEKITVTFNINNSIPPT
FDGEEEPSQGQKAEEQEPELTSTPNFVVEVTKTDGKKTLVLDCHYPEDEIGHEDEAESDIFSIKEVSFQA
TGDSEWRDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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