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Report for CCDS37843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37843.1 Public Mus musculus 18 Apcdd1 23 108 98 CCDS HistoryNCBI Gene:494504Re-query CCDS DB by CCDS ID:37843.1Re-query CCDS DB by GeneID:494504See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096554.11 ENSMUSP00000094302.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096554.11Link to Ensembl Protein Viewer:ENSMUSP00000094302.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096554Re-query CCDS DB by Protein ID:ENSMUSP00000094302
Original member Current member EBI ENSMUST00000163716.2 ENSMUSP00000125868.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163716.2Link to Ensembl Protein Viewer:ENSMUSP00000125868.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163716Re-query CCDS DB by Protein ID:ENSMUSP00000125868
Original member Current member EBI ENSMUST00000236135.1 ENSMUSP00000157539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236135.1Link to Ensembl Protein Viewer:ENSMUSP00000157539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236135Re-query CCDS DB by Protein ID:ENSMUSP00000157539
Original member Current member NCBI NM_133237.4 NP_573500.2 Accepted alive Link to Nucleotide Sequence:NM_133237.4Link to Protein Sequence:NP_573500.2Re-query CCDS DB by Nucleotide ID:NM_133237Re-query CCDS DB by Protein ID:NP_573500Link to BLAST:NP_573500.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573500.2 514 Q3U128 514 100% 0 0

Chromosomal Locations for CCDS 37843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 62922664 62922721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62933875 62934058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62936906 62937437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62949875 62950196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62951830 62952278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGTCCCGTGTGCGCCGCCTTCTGCTTGGATACCTGTTCCCAGCCCTCCTGTTGCATGGGCTGGGAGAGG
GCTCTGCCCTCCTTCATCCAGACAGCAGATCGCACCCTCGGTCCTTAGAGAAAAGCGCCTGGAGGGCTTT
CAAGGAGTCACAGTGTCATCACATGCTGAAGCATCTCCACAACGGTGCGCGGATCACAGTGCAGATGCCC
CCGACCATCGAGGGCCACTGGGTGTCCACAGGCTGTGAAGTAAGGTCGGGTCCGGAGTTCATGACAAGGT
CTTACAGGTTCTACAACAATAATACCTTCAAGGCCTACCAGTTTTACTATGGCAGCAACCGCTGTACAAA
CCCCACCTACACCCTCATCATCCGAGGCAAGATCCGGCTTCGCCAGGCGTCCTGGATCATCCGTGGGGGC
ACCGAAGCTGACTACCAGCTTCACGGCGTCCAAGTCATCTGCCACACAGAGGCAGTCGCTGAACAGCTCA
GCCGACTGGTGAACCGAACTTGCCCAGGCTTCCTGGCTCCTGGTGGTCCCTGGGTACAGGACGTAGCCTA
TGACCTGTGGCAGGAGGAGAGTAACCACGAGTGCACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAG
CTCATCCGTGTGGAGAAGCAGTATCCCCACCACAGCCTGGACCACCTGGTGGAGGAGCTCTTCCTGGGCG
ACATCCACACGGACGCTACCCAGAGGGTGTTCTACCGGCCGTCCAGTTACCAGCCGCCCCTGCAGAATGC
CAAGAACCACAACCATGCGTGCATAGCCTGCCGCATCATTTTCCGGTCAGATGAACACCACCCTCCCATA
CTGCCCCCCAAGGCTGACCTGACCATTGGCCTCCACGGGGAATGGGTGAGCCAGCGCTGCGAGGTACGCC
CCGAGGTCCTCTTCCTCACCCGCCACTTCATCTTCCACGACAACAACAACACCTGGGAAGGGCATTACTA
CCACTACTCAGACCCTGTCTGCAAGCACCCCACATTCACCATCTACGCTCGAGGCCGCTACAGCCGCGGT
GTGCTCTCATCTAAGGTCATGGGTGGCACGGAGTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCCCA
TGGACGCAGCCACAGCCTCCCTCCTCAATGTCTTCAGTGGGAATGAGTGTGGGGCTGAGGGCTCCTGGCA
GGTGGGTATCCAACAGGATGTGACACATACCAATGGCTGCGTGGCTCTGGGCATCAAACTACCTCACACA
GAATATGAGATCTTCAAAATGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCA
GCGATGGCTCCAGCCCAGACAGACCAGAGAAGAGAGCCACATCCTACCAGATGCCCTTGGTCCAGTGTGC
CTCTTCCTCACCAAGAGCTGAAGAGTTGTTGGAAGACAGTCAAGGTCATCTGTATGGCAGGGCAGCAGGG
AGGACAGCTGGGTCCCTGTTGCTTCCTGCCTTTGTCAGCCTTTGGACTCTCCCACATTGGCGCATCCTCA
GATAG

Translation (514 aa):
MSRVRRLLLGYLFPALLLHGLGEGSALLHPDSRSHPRSLEKSAWRAFKESQCHHMLKHLHNGARITVQMP
PTIEGHWVSTGCEVRSGPEFMTRSYRFYNNNTFKAYQFYYGSNRCTNPTYTLIIRGKIRLRQASWIIRGG
TEADYQLHGVQVICHTEAVAEQLSRLVNRTCPGFLAPGGPWVQDVAYDLWQEESNHECTKAVNFAMHELQ
LIRVEKQYPHHSLDHLVEELFLGDIHTDATQRVFYRPSSYQPPLQNAKNHNHACIACRIIFRSDEHHPPI
LPPKADLTIGLHGEWVSQRCEVRPEVLFLTRHFIFHDNNNTWEGHYYHYSDPVCKHPTFTIYARGRYSRG
VLSSKVMGGTEFVFKVNHMKVTPMDAATASLLNVFSGNECGAEGSWQVGIQQDVTHTNGCVALGIKLPHT
EYEIFKMEQDTRGRYLLFNGQRPSDGSSPDRPEKRATSYQMPLVQCASSSPRAEELLEDSQGHLYGRAAG
RTAGSLLLPAFVSLWTLPHWRILR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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