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Report for CCDS15837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15837.1 Public Mus musculus 2 Pierce1 23 108 98 CCDS HistoryNCBI Gene:69327Re-query CCDS DB by CCDS ID:15837.1Re-query CCDS DB by GeneID:69327See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086370.10 ENSMUSP00000083557.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086370.10Link to Ensembl Protein Viewer:ENSMUSP00000083557.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086370Re-query CCDS DB by Protein ID:ENSMUSP00000083557
Original member Current member NCBI NM_027040.1 NP_081316.1 Accepted alive Link to Nucleotide Sequence:NM_027040.1Link to Protein Sequence:NP_081316.1Re-query CCDS DB by Nucleotide ID:NM_027040Re-query CCDS DB by Protein ID:NP_081316Link to BLAST:NP_081316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081316.1 167 Q5BN45 167 100% 0 0

Chromosomal Locations for CCDS 15837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28462246 28462434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28465137 28465215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28466034 28466269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGTCTGAAGAAAAACCTCAACAGTCCGCGGAGGAGCCGGAGCCGGGGGAGCCCAAGGCTAAGCCCGCCC
CAGAGGAGCCGGAGCCGGGGGAGCCCAAGGCTAAGCCTGCCCCAGAGGAGCCGGAGCCGGGGGAGCCCAA
GGCTAAGCCTGCCCCAGAGAAGACCAGCGACTACTACCGCATTAGCGAGAAGCTCCCAGTCAGGTTCAAC
AACCCGGGGTGGTTTCATGGCTACGGGACCAAGGAAGCTGTTTCCATGTACAGGACCAGTAACCAAACCT
ACGGAAGCAGAGCCCCCACGGTGCATGAGATGCCAAAAGTATTTTATCCATCTTCAAATAAGTTTTCCAG
ACAACACGCAGCTTTTGGAATGTTCCAGAGTCATAATATTAATGTCACCCTGGAGAAGAGCTTAGTGACC
GGGCCTGACAATCACATCACCCACTATGACCGTTTGAACTTTCACCCCAGTTACAATGTCAACAGGCCGT
CCATCTGTGACTAA

Translation (167 aa):
MSEEKPQQSAEEPEPGEPKAKPAPEEPEPGEPKAKPAPEEPEPGEPKAKPAPEKTSDYYRISEKLPVRFN
NPGWFHGYGTKEAVSMYRTSNQTYGSRAPTVHEMPKVFYPSSNKFSRQHAAFGMFQSHNINVTLEKSLVT
GPDNHITHYDRLNFHPSYNVNRPSICD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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