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Report for CCDS15463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15463.1 Public Mus musculus 1 Nuf2 23 108 98 CCDS HistoryNCBI Gene:66977Re-query CCDS DB by CCDS ID:15463.1Re-query CCDS DB by GeneID:66977See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028000.12 ENSMUSP00000028000.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028000.12Link to Ensembl Protein Viewer:ENSMUSP00000028000.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028000Re-query CCDS DB by Protein ID:ENSMUSP00000028000
Original member Current member EBI ENSMUST00000111368.7 ENSMUSP00000106999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111368.7Link to Ensembl Protein Viewer:ENSMUSP00000106999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111368Re-query CCDS DB by Protein ID:ENSMUSP00000106999
Original member Current member NCBI NM_001355159.1 NP_001342088.1 Accepted alive Link to Nucleotide Sequence:NM_001355159.1Link to Protein Sequence:NP_001342088.1Re-query CCDS DB by Nucleotide ID:NM_001355159Re-query CCDS DB by Protein ID:NP_001342088Link to BLAST:NP_001342088.1
Original member Current member NCBI NM_023284.3 NP_075773.2 Accepted alive Link to Nucleotide Sequence:NM_023284.3Link to Protein Sequence:NP_075773.2Re-query CCDS DB by Nucleotide ID:NM_023284Re-query CCDS DB by Protein ID:NP_075773Link to BLAST:NP_075773.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342088.1 463 Q99P69-1 463 100% 0 0
NP_075773.2 463 Q99P69-1 463 100% 0 0

Chromosomal Locations for CCDS 15463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169498789 169498920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169504465 169504600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169505982 169506157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169507244 169507384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169510400 169510537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169512167 169512229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169513445 169513541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169514912 169514985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169516561 169516658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169522371 169522432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169522855 169522931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169523904 169523978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169525312 169525434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGAAACTTTGTCATTCCCCAGATACAATGTAGCTGAGCTTGTGGTTCATATTCGCAATAAATTATTAA
CAGGAGCAGATGGCAAAAACCTCTCGAAGAGCGATTTTCTTCCAAATCCGAAGTCTGATGTCTTGTACAT
GATTTACATGAAAGCCTTACAGTTAGTGTATGGAGTCCGGCTGGAGCACTTCTACATGATGCCGATGAAC
ATAGAAGTCACATATCCACATTTAATGGAGGGCTTCTTACCAGTCAGAAGTTTGTTCTTTTACATGGATT
CCTTTATGCCCATTTGCCGGGTGAATGACTTTGAGATTGTCGACATTCTTAATCCAAGAACAAACCGGAC
AAGTCGTTTTTTAAGTGGCATTATCAACTTTATTCACTTCAGAGAAACGTGCCTGGAGAAGTGTGAAGAA
TTTCTTTTGCAAAATAAATCCTCTATGGTCAGAATGCAGCAGTTAAGCAATGTGCACCAGGAAGCTTTGA
TGAAACTGGAAAAACTCAATACCGTTCCGGCTGAGGAGCGAGAGGAGTTCAAGCAGTTTATGGATGACAT
TCAGGAGCTGCAGCACCTGCTGAATGAAGAGTTCAGACAGAAAACGACACTGCTGCAGGAGGAATATGCC
AAAATGAAATCCGATATTTCAGAGAAAACCAAGCATTTAAATGAACAAAAGTTGTCATTAGTTTCTTTGA
AAGAAGTTGAAGACAATTTGAAAAGCAAAATTGTGGACTCTCCAGAGAAGCTGAAGAACTATAAAGACAA
GATGAAAGGCACCGTCCAGAAGCTCCGCAGTGCCAGGGAAAAAGTGATGGAGCAGTATGATATCTATAGA
GATTCTGTGGATTGCTTGCCTTCCTGTCAGCTGGAGGTGCAGTTGTATCAAAAGAAATCACAGGACCTTG
CAGATAATAGGGAGAAACTAAGCAGTCTCTTAAAGGAGAGCTTGAACTTGGAGGACCAGATTGAAAGTGA
TTCATCGGAACTAAAGAAACTGAAGACTGAAGAAAATTCTCTCATAAGAATGACGACTGTAAAGAAGGAG
AAGCTCGCCACCGCGCGATTCAAAATCAACAAGAAGCAGGAGGATGTGAAACATTACAAGCAGGCCATGA
TTGAAGACTGCAATAAAGTTCAAGAAAAGAGAGATGCTGTCTGTGAGCAAGTAACCACTGTTAATCAAGA
AATCCACAAGATTAAATCTGCAATTCAACAACTGAGAGATACCAAGAAAAGGGAGATATTGAAGTCTCAG
GAGATCTTTGTAAACCTGAAAAGTGCTCTGGAGAAGTACCATGAGGGCATCGAGAAGGTAGCGGAGGAGC
GCAGCGCTAAACTGGAGGAGAAGACGGCAGAGCTGAAGAAGAGGATGGTCAGAATGGTCTGA

Translation (463 aa):
METLSFPRYNVAELVVHIRNKLLTGADGKNLSKSDFLPNPKSDVLYMIYMKALQLVYGVRLEHFYMMPMN
IEVTYPHLMEGFLPVRSLFFYMDSFMPICRVNDFEIVDILNPRTNRTSRFLSGIINFIHFRETCLEKCEE
FLLQNKSSMVRMQQLSNVHQEALMKLEKLNTVPAEEREEFKQFMDDIQELQHLLNEEFRQKTTLLQEEYA
KMKSDISEKTKHLNEQKLSLVSLKEVEDNLKSKIVDSPEKLKNYKDKMKGTVQKLRSAREKVMEQYDIYR
DSVDCLPSCQLEVQLYQKKSQDLADNREKLSSLLKESLNLEDQIESDSSELKKLKTEENSLIRMTTVKKE
KLATARFKINKKQEDVKHYKQAMIEDCNKVQEKRDAVCEQVTTVNQEIHKIKSAIQQLRDTKKREILKSQ
EIFVNLKSALEKYHEGIEKVAEERSAKLEEKTAELKKRMVRMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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