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Report for CCDS27529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27529.1 Public Mus musculus 15 Lypd2 23 108 98 CCDS HistoryNCBI Gene:68311Re-query CCDS DB by CCDS ID:27529.1Re-query CCDS DB by GeneID:68311See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023260.4 ENSMUSP00000023260.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023260.4Link to Ensembl Protein Viewer:ENSMUSP00000023260.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023260Re-query CCDS DB by Protein ID:ENSMUSP00000023260
Original member Current member NCBI NM_026671.1 NP_080947.1 Accepted alive Link to Nucleotide Sequence:NM_026671.1Link to Protein Sequence:NP_080947.1Re-query CCDS DB by Nucleotide ID:NM_026671Re-query CCDS DB by Protein ID:NP_080947Link to BLAST:NP_080947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080947.1 127 Q9DD23 127 100% 0 0

Chromosomal Locations for CCDS 27529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74732334 74732539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74732967 74733086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74734230 74734287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCAGGGGACCTGGATGGTGCTGTTGGCACTGATATTGGGCACCTTCGGGGAGCTTGCTATGGCCTTAC
AGTGCTACACCTGTGCGAATCCTGTGAGTGCATCCAACTGTGTCACCACCACCCACTGCCACATCAATGA
AACCATGTGCAAGACTACGCTCTACTCCCTGGAGATTGTTTTCCCTTTCCTGGGGGACTCCACGGTGACC
AAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGCCAGTGTCCTGCT
GCAATTCTGACCTATGCAACGTGGATGGGGCACCCAGCCTGGGCAGTCCTGGTGGCCTGCTCCTTGCCCT
GGCACTTTTCTTGCTCTTGGGTGTCCTGCTGTAA

Translation (127 aa):
MQGTWMVLLALILGTFGELAMALQCYTCANPVSASNCVTTTHCHINETMCKTTLYSLEIVFPFLGDSTVT
KSCASKCEPSDVDGIGQTRPVSCCNSDLCNVDGAPSLGSPGGLLLALALFLLLGVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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