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Report for CCDS35726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35726.1 Public Mus musculus 1 Lhx9 23 108 98 CCDS HistoryNCBI Gene:16876Re-query CCDS DB by CCDS ID:35726.1Re-query CCDS DB by GeneID:16876See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112026.3 ENSMUSP00000107657.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112026.3Link to Ensembl Protein Viewer:ENSMUSP00000107657.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112026Re-query CCDS DB by Protein ID:ENSMUSP00000107657
Original member Current member NCBI NM_001042577.1 NP_001036042.1 Accepted alive Link to Nucleotide Sequence:NM_001042577.1Link to Protein Sequence:NP_001036042.1Re-query CCDS DB by Nucleotide ID:NM_001042577Re-query CCDS DB by Protein ID:NP_001036042Link to BLAST:NP_001036042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036042.1 397 Q9WUH2-3 397 100% 0 0

Chromosomal Locations for CCDS 35726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 138831367 138831624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138832702 138832904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138838343 138838698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138839873 138840075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138841808 138841981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGAAATAGTGGGGTGCCGAGCCGAAAACAATTCGTGTCCTTTCCGCCCCCCAGCCATGCTCTTCCACG
GAATCTCCGGAGGCCACATCCAAGGTATCATGGAGGAGATGGAGCGCAGATCCAAGACTGAGGCCCGTCT
GACCAAAGGCACTCAGCTCAACGGCCGCGACGCGGGTATGCCCCCTCTCAGCCCGGAGAAGCCTGCTCTG
TGCGCCGGCTGCGGGGGCAAGATCTCCGACAGGTACTATCTGCTGGCCGTAGACAAACAGTGGCATCTTA
GGTGCCTGAAGTGCTGTGAATGTAAGCTGGCTCTGGAATCTGAGCTCACCTGCTTTGCCAAGGACGGTAG
CATTTACTGCAAGGAGGATTATTACAGAAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGGCATT
TCCGCCTCTGAGATGGTCATGCGCGCCCGAGACTCTGTCTACCATCTGAGCTGCTTCACTTGTTCCACTT
GCAACAAGACCTTGACCACGGGCGACCATTTCGGGATGAAGGACAGCCTGGTGTACTGCCGCGCACACTT
CGAGACCCTCTTGCAAGGGGAATATCCACCTCAGCTGAGCTACACGGAGCTGGCGGCCAAGAGCGGCGGC
TTGGCTTTGCCTTACTTCAATGGCACTGGCACCGTGCAGAAGGGGCGGCCCCGGAAGCGGAAGAGCCCAG
CTCTGGGAGTGGACATCGTGAATTACAACTCAGGTTGTAATGAGAACGAGGCAGACCACTTGGACCGGGA
CCAGCAGCCTTATCCACCTTCACAGAAGACCAAACGGATGCGAACTTCTTTCAAGCATCACCAGCTCCGG
ACCATGAAATCCTACTTTGCTATCAACCATAACCCAGATGCCAAGGACCTCAAACAGCTTGCTCAAAAAA
CAGGCCTGACCAAAAGAGTTTTACAGGTTTGGTTCCAAAACGCACGAGCCAAATTCAGAAGGAACCTTTT
GCGGCAGGAGAATGGGGGTGTTGATAAAGCTGACGGCACGTCGCTTCCGGCCCCGCCCTCAGCAGACAGC
GGCGCTCTCACTCCACCCGGCACTGCGACCACTTTAACAGACCTGACCAATCCCACTGTCACTGTAGTGA
CAACTGTGACCTCTAACATGGACAGCCACGAACCCGGAAGCCCCTCACAAACTACCTTAACGAACCTTTT
CTAA

Translation (397 aa):
MEIVGCRAENNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLTKGTQLNGRDAGMPPLSPEKPAL
CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGI
SASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGG
LALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLR
TMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADS
GALTPPGTATTLTDLTNPTVTVVTTVTSNMDSHEPGSPSQTTLTNLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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