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Report for CCDS13168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13168.1 Public Homo sapiens 20 VSX1 24 110 108 CCDS HistoryNCBI Gene:30813Re-query CCDS DB by CCDS ID:13168.1Re-query CCDS DB by GeneID:30813See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376709.9 ENSP00000365899.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376709.9Link to Ensembl Protein Viewer:ENSP00000365899.3Re-query CCDS DB by Nucleotide ID:ENST00000376709Re-query CCDS DB by Protein ID:ENSP00000365899
Original member Current member NCBI NM_014588.6 NP_055403.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014588.6Link to Protein Sequence:NP_055403.2Re-query CCDS DB by Nucleotide ID:NM_014588Re-query CCDS DB by Protein ID:NP_055403Link to BLAST:NP_055403.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055403.2 365 Q9NZR4-1 365 100% 0 0

Chromosomal Locations for CCDS 13168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 25076261 25076550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25077685 25077865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25078829 25078952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25079436 25079514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25081673 25082096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGACCGGCCGGGACTCGCTTTCCGACGGGCGCACTAGCAGCAGGGCGCTGGTGCCTGGCGGTTCCCCTA
GGGGCTCGCGCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCTTGGAGGCCGAGCTGCCGGCGCCCGC
TGGCCCAGGACAGGGATCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGC
TCCAGCCTGGCGCGTGGGGCCCTACCGCTGGGACTCGGCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGG
CGGCCGCTCGAGCACCCTGCCTGCTCCTAGCGGACGTGCCGTTCCTGCCGCCCAGGGGCCCCGAGCCCGC
TGCCCCGCTGGCTCCCAGCCGTCCGCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCACG
TCCGATGAGGACAGCCAGTCTGAAGACAGGAATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGAAGA
AGCGGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCA
CTACCCTGATGTGTATGCCCGAGAAATGCTGGCTGTGAAAACTGAGCTCCCCGAAGACCGGATACAGGTC
TGGTTTCAAAACCGCAGGGCCAAATGGCGCAAGCGGGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCG
AGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAACTCCGCCGA
GGGCGGCCTGCTGGGCTCCTGCGCGCCCTGGCTCCTGGGGATGCATAAAAAATCCATGGGGATGATAAGG
AAGCCAGGAAGTGAAGATAAGTTGGCAGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTCTAGCCAGA
GTGAGTCAGGATCACAGAGAGGCTCAGATAAAGTGAGCCCTGAGAATGGCTTGGAAGATGTGGCTATTGA
CCTCTCCAGCTCTGCCCGGCAGGAGACCAAGAAAGTGCACCCTGGGGCTGGTGCTCAAGGAGGCTCCAAC
TCCACGGCACTGGAGGGGCCCCAGCCAGGGAAGGTGGGAGCCACATGA

Translation (365 aa):
MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDG
SSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVST
SDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV
WFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIR
KPGSEDKLAGLWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSN
STALEGPQPGKVGAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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