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Report for CCDS3871.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3871.2 Public Homo sapiens 5 TENT4A 24 110 108 CCDS HistoryNCBI Gene:11044Re-query CCDS DB by CCDS ID:3871.2See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 3871.1
The coding region has been updated to extend the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3871.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230859.8 ENSP00000230859.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230859.8Link to Ensembl Protein Viewer:ENSP00000230859.7Re-query CCDS DB by Nucleotide ID:ENST00000230859Re-query CCDS DB by Protein ID:ENSP00000230859
Original member Current member NCBI NM_006999.6 NP_008930.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006999.6Link to Protein Sequence:NP_008930.2Re-query CCDS DB by Nucleotide ID:NM_006999Re-query CCDS DB by Protein ID:NP_008930Link to BLAST:NP_008930.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008930.2 792 Q5XG87-1 792 100% 0 0

Chromosomal Locations for CCDS 3871.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 6713984 6714699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6737510 6737633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6738683 6738729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6739732 6739852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6742490 6742597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6743712 6743840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6746214 6746427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6748464 6748590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6749557 6749657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6750331 6750503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6751039 6751197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6752873 6753037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6754751 6754945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGGATCCGCGCGTGGCCTGGATCCAGCCCGAGCAGAAGGGGCCGGCCAATGCCCTGTGGATGCAGATCT
GGGAGACCTCGCAGGGCGTGGGCCGCGGCGGCTCGGGCTTCGCGTCCTATTTCTGCCTCAACTCGCCGGC
GCTGGACACGGCGGCCGCGGCGGGGGCGGCCGGGCGGGGCAGTGGCGGCCTGGGCCCCGCGCTGCCCGCC
GCGTCGCCCCCGCCGCCCGGCCCCACCGCGCCCGCCGCGCTGCCCCCCGCGCTGCTGACGGCGCTGGGGC
CCGCGGCCGAGGGCGCGCGGCGCTTGCACAAGTCGCCGTCGCTGTCGTCCTCGTCGTCGTCCTCCTCGTC
CAACGCGGAGTCGGGCACCGAGAGCCCCGGCTGCTCGTCGTCGTCCTCCAGCAGCGCCTCGCTGGGCCGG
CCGGGCGGCGGCCGCGGCGGCGCCTTCTTCAACTTCGCCGACGGCGCGCCCAGCGCCCCTGGCACAGCCA
ACGGGCACCCCGGGCCGCGCGGCCCCGCGCCCGCCGGCTCCCCGTCGCAGCACCAGTTCCACCCGGGTCG
CCGGAAACGCGAGAACAAGGCCAGCACCTACGGCCTCAACTACCTGCTGTCCGGCAGCCGCGCGGCCGCT
CTCAGCGGAGGGGGCGGCCCCGGGGCCCAGGCGCCGCGGCCCGGCACCCCGTGGAAGAGCCGCGCGTACA
GCCCGGGCATCCAGGGACTACATGAGGAAATAATTGACTTTTATAACTTCATGTCCCCTTGTCCTGAAGA
AGCAGCTATGAGAAGAGAGGTGGTGAAACGGATCGAAACTGTGGTGAAAGACCTTTGGCCGACGGCTGAT
GTACAGATATTTGGCAGCTTTAGTACAGGTCTTTATCTTCCAACTAGCGACATAGACCTGGTGGTCTTCG
GGAAATGGGAGCGTCCTCCTTTACAGCTGCTGGAGCAAGCCCTGCGGAAGCACAACGTGGCTGAGCCGTG
TTCCATCAAAGTCCTTGACAAGGCTACGGTACCAATAATAAAGCTCACAGATCAGGAGACTGAAGTGAAA
GTTGACATCAGCTTTAACATGGAGACGGGCGTCCGGGCAGCGGAGTTCATCAAGAATTACATGAAGAAAT
ATTCATTGCTGCCTTACTTGATTTTAGTATTGAAACAGTTCCTTCTGCAGAGGGACCTGAATGAAGTTTT
TACAGGTGGAATTAGCTCATACAGCCTAATTTTAATGGCCATTAGCTTTCTACAGTTGCATCCAAGAATT
GATGCCCGGAGAGCTGATGAAAACCTTGGAATGCTTCTTGTAGAATTTTTTGAACTCTATGGGAGAAATT
TTAATTACTTGAAAACCGGTATTAGAATCAAAGAAGGAGGTGCCTATATCGCCAAAGAGGAGATCATGAA
AGCCATGACCAGCGGGTACAGACCGTCGATGCTGTGCATTGAGGACCCCCTGCTGCCAGGGAATGACGTT
GGCCGGAGCTCCTATGGCGCCATGCAGGTGAAGCAGGTCTTCGATTATGCCTACATAGTGCTCAGCCATG
CTGTGTCACCGCTGGCCAGGTCCTATCCAAACAGAGACGCCGAAAGTACTTTAGGAAGAATCATCAAAGT
AACTCAGGAGGTGATTGACTACCGGAGGTGGATCAAAGAGAAGTGGGGCAGCAAAGCCCACCCGTCGCCA
GGCATGGACAGCAGGATCAAGATCAAAGAGCGAATAGCCACATGCAATGGGGAGCAGACGCAGAACCGAG
AGCCCGAGTCTCCCTATGGCCAGCGCTTGACTTTGTCGCTGTCCAGCCCCCAGCTCCTGTCTTCAGGCTC
CTCGGCCTCTTCTGTGTCTTCACTTTCTGGGAGTGACGTTGATTCAGACACACCGCCCTGCACAACGCCC
AGTGTTTACCAGTTCAGTCTGCAAGCGCCAGCTCCTCTCATGGCCGGCTTACCCACCGCCTTGCCAATGC
CCAGTGGCAAACCTCAGCCCACCACTTCCAGAACACTGATCATGACAACCAACAATCAGACCAGGTTTAC
TATACCTCCACCGACCCTAGGGGTTGCTCCTGTTCCTTGCAGACAAGCTGGTGTAGAAGGAACTGCGTCT
TTGAAAGCCGTCCACCACATGTCTTCCCCGGCCATTCCCTCAGCGTCCCCCAACCCGCTCTCGAGCCCTC
ATCTGTATCATAAGCAGCACAACGGCATGAAACTGTCCATGAAGGGCTCTCACGGCCACACCCAAGGCGG
CGGCTACAGCTCTGTGGGTAGCGGAGGTGTGCGGCCCCCTGTGGGCAACAGGGGACACCACCAGTATAAC
CGCACCGGCTGGAGGAGGAAAAAACACACACACACACGGGACAGTCTGCCCGTGAGCCTCAGCAGATAA

Translation (792 aa):
MDPRVAWIQPEQKGPANALWMQIWETSQGVGRGGSGFASYFCLNSPALDTAAAAGAAGRGSGGLGPALPA
ASPPPPGPTAPAALPPALLTALGPAAEGARRLHKSPSLSSSSSSSSSNAESGTESPGCSSSSSSSASLGR
PGGGRGGAFFNFADGAPSAPGTANGHPGPRGPAPAGSPSQHQFHPGRRKRENKASTYGLNYLLSGSRAAA
LSGGGGPGAQAPRPGTPWKSRAYSPGIQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTAD
VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVK
VDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRI
DARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSP
GMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTP
SVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS
LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYN
RTGWRRKKHTHTRDSLPVSLSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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