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Report for CCDS84220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84220.1 Public Mus musculus 16 Nrros 23 108 98 CCDS HistoryNCBI Gene:224109Re-query CCDS DB by CCDS ID:84220.1Re-query CCDS DB by GeneID:224109See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 84220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099991.10 ENSMUSP00000097571.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099991.10Link to Ensembl Protein Viewer:ENSMUSP00000097571.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099991Re-query CCDS DB by Protein ID:ENSMUSP00000097571
Original member Current member EBI ENSMUST00000126869.1 ENSMUSP00000116388.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126869.1Link to Ensembl Protein Viewer:ENSMUSP00000116388.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126869Re-query CCDS DB by Protein ID:ENSMUSP00000116388
Original member Current member EBI ENSMUST00000143682.7 ENSMUSP00000119349.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143682.7Link to Ensembl Protein Viewer:ENSMUSP00000119349.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143682Re-query CCDS DB by Protein ID:ENSMUSP00000119349
Original member Current member NCBI NM_001347181.1 NP_001334110.1 Accepted alive Link to Nucleotide Sequence:NM_001347181.1Link to Protein Sequence:NP_001334110.1Re-query CCDS DB by Nucleotide ID:NM_001347181Re-query CCDS DB by Protein ID:NP_001334110Link to BLAST:NP_001334110.1
Original member Current member NCBI NM_146069.5 NP_666181.3 Accepted alive Link to Nucleotide Sequence:NM_146069.5Link to Protein Sequence:NP_666181.3Re-query CCDS DB by Nucleotide ID:NM_146069Re-query CCDS DB by Protein ID:NP_666181Link to BLAST:NP_666181.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334110.1 693 Q8BMT4-1 693 100% 0 0
NP_666181.3 693 Q8BMT4-1 693 100% 0 0

Chromosomal Locations for CCDS 84220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32143032 32145005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32147553 32147660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGGAGTTCCCGCCCCTCTGGCTTTGCCTGGGTTTTCACTTCTTGATTGTGGAATGGAGGAGCGGACCTG
GGACAGCCACTGCAGCTTCCCAAGGAGGCTGCAAGGTGGTCGACGGAGTCGCTGACTGCCGGGGTCTGAA
CCTTGCTTCGGTACCCAGCAGCCTCCCACCCCATTCCCGGATGCTCATTCTGGATGCTAACCCTCTCAAG
GACCTGTGGAACCATTCCCTCCAGGCCTACCCACGCCTGGAGAACCTCAGCCTGCATAGCTGTCACCTGG
ACCGTATCAGCCACTACGCCTTCCGAGAGCAAGGCCACTTACGCAACCTGGTTCTGGCAGACAACCGCCT
CTCGGAGAACTACAAGGAGTCAGCCGCAGCACTCCACACCCTGCTGGGACTTCGGAGACTGGACTTGTCT
GGAAACTCCCTGACCGAAGACATGGCGGCTCTCATGCTTCAGAACCTCTCCTCGTTGGAGGTTGTGTCCT
TGGCAAGGAATACCCTCATGAGGCTCGACGACTCTATCTTTGAGGGCCTGGAACACCTTGTAGAGCTAGA
TTTGCAGAGAAACTACATCTTTGAGATCGAGGGCGGGGCGTTTGACGGCTTGACTGAGCTGAGGCGTCTC
AACCTTGCCTATAACAACCTCCCCTGCATTGTGGACTTCAGCCTCACCCAGTTACGGTTCCTCAACGTCA
GTTATAACATCCTAGAGTGGTTCCTGGCAGCCAGGGAGGAGGTGGCCTTCGAATTGGAGATACTGGACCT
GTCTCACAACCAGCTGCTCTTCTTCCCACTCTTGCCTCAGTGCGGCAAGCTGCACACCCTCCTGCTCCAG
GACAACAACATGGGCTTCTACAGGGAGCTTTACAACACCTCCTCCCCGCAGGAGATGGTGGCCCAGTTCC
TTCTTGTGGACGGCAATGTGACTAACATCACAACTGTCAACCTCTGGGAGGAGTTTTCCTCCAGCGACCT
GTCAGCTCTTCGCTTCCTGGACATGAGCCAAAACCAGTTCCGGCACTTGCCGGATGGTTTCCTGAAGAAG
ACACCTTCCCTTTCCCACCTGAACCTCAACCAGAACTGCCTGAAGATGCTCCACATCCGGGAGCACGAGC
CGCCGGGAGCACTCACCGAGCTGGATCTGAGCCACAACCAGTTGGCAGAGCTGCACCTGGCTCCGGGGCT
CACGGGCTCCCTCAGGAACCTCCGGGTGTTCAACCTGAGTTCCAACCAGCTCCTGGGGGTCCCCACTGGC
CTTTTCGACAATGCCAGCAGCATCACTACAATCGACATGAGTCACAATCAGATCTCACTTTGTCCTCAGA
TGGTGCCCGTAGACTGGGAGGGGCCTCCCAGTTGTGTGGATTTCAGAAACATGGGCTCTTTGAGGAGCCT
TTCTCTGGACGGCTGTGGGCTGAAGGCATTACAAGACTGCCCGTTCCAGGGGACCTCCCTCACTCATTTA
GACCTGTCTAGCAACTGGGGGGTTCTGAATGGGAGCATCAGCCCTCTCTGGGCTGTTGCCCCGACATTAC
AGGTCCTGTCTCTCAGGGACGTGGGCCTTGGTTCTGGCGCTGCAGAGATGGACTTCTCTGCGTTTGGGAA
TCTGCGGGCGTTGGATCTGTCGGGAAACTCCCTGACCAGCTTCCCAAAGTTCAAGGGCAGTTTGGCCCTT
CGGACTCTCGACCTCCGCAGAAACTCTCTCACGGCCCTCCCTCAGAGGGTTGTGTCCGAGCAGCCTCTGA
GGGGTCTGCAGACCATCTACCTCAGCCAGAACCCTTATGACTGCTGTGGGGTGGAAGGATGGGGGGCCCT
GCAGCAGCACTTCAAGACTGTTGCGGACTTGTCCATGGTCACTTGCAACCTCTCTTCCAAGATCGTCCGT
GTGGTGGAGCTGCCCGAAGGCCTGCCTCAGGGCTGTAAGTGGGAACAGGTGGACACTGGTCTCTTCTACC
TCGTGCTCATCCTGCCCAGCTGCCTCACCCTGCTGGTGGCCTGTACTGTCGTCTTCCTCACTTTTAAGAA
GCCTTTGCTTCAGGTCATCAAGAGCCGCTGCCACTGGTCCTCCATATACTGA

Translation (693 aa):
MEFPPLWLCLGFHFLIVEWRSGPGTATAASQGGCKVVDGVADCRGLNLASVPSSLPPHSRMLILDANPLK
DLWNHSLQAYPRLENLSLHSCHLDRISHYAFREQGHLRNLVLADNRLSENYKESAAALHTLLGLRRLDLS
GNSLTEDMAALMLQNLSSLEVVSLARNTLMRLDDSIFEGLEHLVELDLQRNYIFEIEGGAFDGLTELRRL
NLAYNNLPCIVDFSLTQLRFLNVSYNILEWFLAAREEVAFELEILDLSHNQLLFFPLLPQCGKLHTLLLQ
DNNMGFYRELYNTSSPQEMVAQFLLVDGNVTNITTVNLWEEFSSSDLSALRFLDMSQNQFRHLPDGFLKK
TPSLSHLNLNQNCLKMLHIREHEPPGALTELDLSHNQLAELHLAPGLTGSLRNLRVFNLSSNQLLGVPTG
LFDNASSITTIDMSHNQISLCPQMVPVDWEGPPSCVDFRNMGSLRSLSLDGCGLKALQDCPFQGTSLTHL
DLSSNWGVLNGSISPLWAVAPTLQVLSLRDVGLGSGAAEMDFSAFGNLRALDLSGNSLTSFPKFKGSLAL
RTLDLRRNSLTALPQRVVSEQPLRGLQTIYLSQNPYDCCGVEGWGALQQHFKTVADLSMVTCNLSSKIVR
VVELPEGLPQGCKWEQVDTGLFYLVLILPSCLTLLVACTVVFLTFKKPLLQVIKSRCHWSSIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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