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Report for CCDS36073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36073.1 Public Mus musculus 10 Hmga2 23 108 98 CCDS HistoryNCBI Gene:15364Re-query CCDS DB by CCDS ID:36073.1Re-query CCDS DB by GeneID:15364See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072777.13 ENSMUSP00000072556.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072777.13Link to Ensembl Protein Viewer:ENSMUSP00000072556.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000072777Re-query CCDS DB by Protein ID:ENSMUSP00000072556
Original member Current member NCBI NM_010441.3 NP_034571.1 Accepted alive Link to Nucleotide Sequence:NM_010441.3Link to Protein Sequence:NP_034571.1Re-query CCDS DB by Nucleotide ID:NM_010441Re-query CCDS DB by Protein ID:NP_034571Link to BLAST:NP_034571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034571.1 108 P52927 108 100% 0 0

Chromosomal Locations for CCDS 36073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 120364252 120364296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120374668 120374700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120462664 120462714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120473252 120473338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120475953 120476063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGAGCGCACGCGGTGAGGGCGCCGGGCAGCCGTCCACATCAGCCCAGGGACAACCTGCCGCCCCGGTGC
CACAGAAGCGAGGACGCGGCCGACCCAGGAAGCAGCAGCAAGAGCCAACCTGTGAGCCCTCTCCTAAGAG
ACCCAGAGGAAGACCCAAAGGCAGCAAAAACAAGAGCCCCTCTAAAGCAGCCCAGAAGAAAGCAGAGACC
ATTGGAGAAAAACGGCCAAGAGGCAGACCTAGGAAATGGCCACAACAAGTCGTTCAGAAGAAGCCTGCTC
AGGAGACTGAAGAGACATCCTCGCAAGAGTCCGCAGAGGAGGATTAG

Translation (108 aa):
MSARGEGAGQPSTSAQGQPAAPVPQKRGRGRPRKQQQEPTCEPSPKRPRGRPKGSKNKSPSKAAQKKAET
IGEKRPRGRPRKWPQQVVQKKPAQETEETSSQESAEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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