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Report for CCDS20658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20658.1 Public Mus musculus 6 Art4 23 108 98 CCDS HistoryNCBI Gene:109978Re-query CCDS DB by CCDS ID:20658.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032341.2 ENSMUSP00000032341.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032341.2Link to Ensembl Protein Viewer:ENSMUSP00000032341.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000032341Re-query CCDS DB by Protein ID:ENSMUSP00000032341
Original member Current member NCBI NM_026639.2 NP_080915.1 Accepted alive Link to Nucleotide Sequence:NM_026639.2Link to Protein Sequence:NP_080915.1Re-query CCDS DB by Nucleotide ID:NM_026639Re-query CCDS DB by Protein ID:NP_080915Link to BLAST:NP_080915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080915.1 300 Q9CRA0 300 100% 0 0

Chromosomal Locations for CCDS 20658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136849575 136849687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136854352 136855060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136857163 136857243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCGCTGTGGCTTCCAGGAGGGCAGCTCACCCTGCTGCTACTGCTCTGGGTCCAGCAGACACCCGCGG
GGAGCACTGAGGCTCCTCTTAAGGTCGACGTGGACTTGACACCTGATTCCTTTGATGATCAATACCAAGG
CTGTAGCGAACAGATGGTGGAGGAGCTAAATCAAGGAGACTATTTCATAAAGGAAGTAGATACTCATAAG
TATTACTCCAGAGCATGGCAAAAAGCCCACCTAACCTGGCTGAACCAGGCAAAGGCCCTCCCGGAGAGCA
TGACCCCGGTGCATGCTGTGGCCATTGTGGTTTTCACCCTGAATCTCAATGTGAGCTCTGACTTGGCCAA
GGCCATGGCCAGGGCTGCGGGATCTCCTGGGCAGTACAGTCAGTCATTCCACTTCAAGTATCTGCACTAC
TACCTCACCTCAGCCATCCAGCTGCTGAGGAAAGACAGCTCTACAAAGAACGGCAGTCTGTGTTACAAGG
TGTACCACGGGATGAAGGATGTGAGCATTGGAGCCAACGTAGGTTCCACCATTCGATTCGGCCAGTTCCT
CTCTGCCTCCCTGCTAAAGGAAGAGACACGGGTGTCTGGAAACCAAACCCTGTTTACCATTTTCACTTGT
CTGGGTGCCTCTGTGCAAGACTTCTCTCTCAGGAAGGAAGTCTTGATCCCCCCCTATGAGTTATTTGAAG
TCGTAAGTAAGAGCGGCAGCCCCAAAGGAGATTTGATAAACTTGCGGTCTGCTGGGAACATGAGCACGTA
TAACTGCCAGCTGCTAAAAGCTTGCAGCAAGAAGTGCGCCCCTGCTCCAGTGGTTATCGGCTGCCTCTTT
TTGGTCACTGTTGTTATCTCGTCCAAAAGCAGAGCGCAAAGGAATCTACTGGCTCCTTTTTAA

Translation (300 aa):
MALWLPGGQLTLLLLLWVQQTPAGSTEAPLKVDVDLTPDSFDDQYQGCSEQMVEELNQGDYFIKEVDTHK
YYSRAWQKAHLTWLNQAKALPESMTPVHAVAIVVFTLNLNVSSDLAKAMARAAGSPGQYSQSFHFKYLHY
YLTSAIQLLRKDSSTKNGSLCYKVYHGMKDVSIGANVGSTIRFGQFLSASLLKEETRVSGNQTLFTIFTC
LGASVQDFSLRKEVLIPPYELFEVVSKSGSPKGDLINLRSAGNMSTYNCQLLKACSKKCAPAPVVIGCLF
LVTVVISSKSRAQRNLLAPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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