CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS31612.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
31612.1 |
Public |
Homo sapiens |
11 |
SF3B2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10992](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:31612.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 31612.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000322535.11 |
ENSP00000318861.6 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000322535.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000318861.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000322535](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000318861](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_006842.3 |
NP_006833.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_006842.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_006833.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_006842](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_006833](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_006833.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_006833.2 |
895 |
Q13435 |
895 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 31612.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2688 nt): ATGGCGACGGAGCATCCCGAGCCTCCCAAAGCAGAATTGCAGCTGCCGCCGCCGCCACCTCCAGGCCACT ATGGCGCCTGGGCTGCCCAGGAGCTTCAGGCCAAGTTGGCAGAGATCGGAGCTCCGATCCAGGGTAATCG CGAGGAGCTGGTGGAGCGGCTGCAGAGCTACACCCGCCAGACTGGCATCGTGCTGAATCGGCCGGTTTTG AGAGGGGAAGATGGGGACAAAGCCGCTCCACCTCCCATGTCGGCACAGCTCCCTGGAATTCCCATGCCAC CACCACCTTTGGGACTCCCCCCTCTGCAGCCTCCTCCGCCACCCCCACCACCTCCACCAGGCCTTGGCCT TGGCTTTCCTATGGCCCACCCACCAAATTTGGGGCCCCCGCCTCCTCTCCGTGTGGGTGAGCCAGTGGCA CTGTCAGAGGAGGAGCGGCTGAAGTTGGCTCAGCAGCAGGCGGCATTGCTGATGCAGCAGGAGGAGCGTG CCAAGCAGCAGGGAGATCATTCGCTGAAGGAACATGAGCTCTTGGAGCAGCAGAAGCGGGCAGCTGTGTT ACTGGAGCAGGAACGACAGCAGGAGATTGCCAAGATGGGCACCCCAGTCCCTCGGCCCCCACAAGACATG GGCCAGATTGGTGTGCGCACTCCTCTGGGTCCTCGAGTAGCTGCTCCAGTGGGCCCAGTGGGCCCCACTC CTACAGTTTTGCCCATGGGAGCCCCTGTTCCCCGGCCTCGTGGTCCCCCACCGCCCCCTGGAGATGAGAA CAGAGAGATGGATGACCCCTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAGAAGATCCTGCAGCTGAAG GAGAGCCGCCAGGAAGAGATGAATTCTCAGCAGGAGGAAGAGGAAATGGAAACAGATGCTCGCTCGTCCC TGGGCCAGTCAGCGTCAGAGACTGAGGAGGACACAGTGTCCGTATCTAAAAAGGAGAAAAACCGGAAGCG TAGGAACCGAAAGAAGAAGAAAAAGCCCCAGCGGGTGCGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGG GAGAAAGACTCAACCCGGTCCCGTGGCTCTGATTCCCCAGCAGCTGATGTTGAGATTGAGTATGTGACTG AAGAACCTGAAATTTACGAGCCCAACTTTATCTTCTTTAAGAGGATCTTTGAGGCTTTTAAGCTCACTGA TGATGTGAAGAAGGAGAAAGAGAAGGAGCCAGAGAAACTTGACAAACTGGAGAACTCTGCAGCCCCCAAG AAGAAGGGATTTGAAGAGGAGCACAAGGACAGTGATGATGACAGCAGTGATGACGAGCAGGAAAAGAAGC CAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAACCGCTTCACTGTGGCTGAACTCAAGCA GCTGGTGGCTCGGCCCGATGTCGTGGAGATGCACGATGTGACAGCGCAGGACCCTAAGCTCTTGGTTCAC CTCAAGGCCACTCGGAACTCTGTGCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAATACCTGCAGGGCA AACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACTTCATCAAACGCACAGGCATCCAGGAGATGCG AGAGGCCCTGCAGGAGAAGGAAGAACAGAAGACCATGAAGTCAAAAATGCGAGAGAAAGTTCGGCCTAAG ATGGGCAAAATTGACATCGACTACCAGAAACTGCATGATGCCTTCTTCAAGTGGCAGACCAAGCCAAAGC TGACCATCCATGGGGACCTGTACTATGAGGGGAAGGAGTTCGAGACACGACTGAAGGAGAAGAAGCCAGG AGATCTGTCTGATGAGCTAAGGATTTCCTTGGGGATGCCAGTAGGACCAAATGCCCACAAGGTCCCTCCC CCATGGCTGATTGCCATGCAGCGATATGGACCACCCCCATCGTATCCCAACCTGAAAATCCCTGGGCTGA ACTCGCCCATCCCTGAGAGCTGTTCCTTTGGGTACCATGCTGGTGGCTGGGGCAAACCTCCAGTGGATGA GACTGGGAAACCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAATTTCAGACCAAGACTGAGGAA GAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAAGAGGAAG AGGAAGAAAGTGATGAAGACAAACCAGATGAGACAGGCTTTATTACCCCTGCAGACAGTGGCCTTATCAC TCCTGGAGGCTTTTCATCAGTGCCTGCTGGAATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAG ATTGAGGAGGCGATGGACGGAAGTGAGACACCTCAGCTCTTCACTGTGTTGCCAGAGAAGAGAACAGCCA CTGTTGGAGGGGCCATGATGGGATCAACCCACATTTATGACATGTCCACGGTTATGAGCCGGAAGGGCCC GGCTCCTGAGCTGCAAGGTGTGGAAGTGGCGCTGGCGCCTGAAGAGTTGGAGCTGGATCCTATGGCCATG ACCCAGAAGTATGAGGAGCATGTGCGGGAGCAGCAGGCTCAAGTAGAGAAGGAGGACTTCAGTGACATGG TGGCTGAGCACGCTGCCAAACAGAAGCAAAAAAAACGGAAAGCTCAGCCCCAGGACAGCCGTGGGGGCAG CAAGAAATATAAGGAGTTCAAGTTTTAG
Translation (895 aa): MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQTGIVLNRPVL RGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPPLRVGEPVA LSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQQKRAAVLLEQERQQEIAKMGTPVPRPPQDM GQIGVRTPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLK ESRQEEMNSQQEEEEMETDARSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDR EKDSTRSRGSDSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVH LKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPK MGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPP PWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEE EEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKK IEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
|