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Report for CCDS42164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42164.1 Public Homo sapiens 16 CYLD 24 110 108 CCDS HistoryNCBI Gene:1540Re-query CCDS DB by CCDS ID:42164.1Re-query CCDS DB by GeneID:1540See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42164.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398568.6 ENSP00000381574.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398568.6Link to Ensembl Protein Viewer:ENSP00000381574.2Re-query CCDS DB by Nucleotide ID:ENST00000398568Re-query CCDS DB by Protein ID:ENSP00000381574
Original member Current member EBI ENST00000564326.5 ENSP00000454515.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564326.5Link to Ensembl Protein Viewer:ENSP00000454515.1Re-query CCDS DB by Nucleotide ID:ENST00000564326Re-query CCDS DB by Protein ID:ENSP00000454515
Original member Current member EBI ENST00000569418.5 ENSP00000457576.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569418.5Link to Ensembl Protein Viewer:ENSP00000457576.1Re-query CCDS DB by Nucleotide ID:ENST00000569418Re-query CCDS DB by Protein ID:ENSP00000457576
Original member Current member NCBI NM_001042355.2 NP_001035814.1 Accepted alive Link to Nucleotide Sequence:NM_001042355.2Link to Protein Sequence:NP_001035814.1Re-query CCDS DB by Nucleotide ID:NM_001042355Re-query CCDS DB by Protein ID:NP_001035814Link to BLAST:NP_001035814.1
Original member Current member NCBI NM_001042412.3 NP_001035877.1 Accepted alive Link to Nucleotide Sequence:NM_001042412.3Link to Protein Sequence:NP_001035877.1Re-query CCDS DB by Nucleotide ID:NM_001042412Re-query CCDS DB by Protein ID:NP_001035877Link to BLAST:NP_001035877.1
Original member Current member NCBI NM_001378744.1 NP_001365673.1 Accepted alive Link to Nucleotide Sequence:NM_001378744.1Link to Protein Sequence:NP_001365673.1Re-query CCDS DB by Nucleotide ID:NM_001378744Re-query CCDS DB by Protein ID:NP_001365673Link to BLAST:NP_001365673.1
Original member Current member NCBI NM_001378745.1 NP_001365674.1 Accepted alive Link to Nucleotide Sequence:NM_001378745.1Link to Protein Sequence:NP_001365674.1Re-query CCDS DB by Nucleotide ID:NM_001378745Re-query CCDS DB by Protein ID:NP_001365674Link to BLAST:NP_001365674.1
Original member Current member NCBI NM_001378746.1 NP_001365675.1 Accepted alive Link to Nucleotide Sequence:NM_001378746.1Link to Protein Sequence:NP_001365675.1Re-query CCDS DB by Nucleotide ID:NM_001378746Re-query CCDS DB by Protein ID:NP_001365675Link to BLAST:NP_001365675.1
Original member Current member NCBI NM_001378747.1 NP_001365676.1 Accepted alive Link to Nucleotide Sequence:NM_001378747.1Link to Protein Sequence:NP_001365676.1Re-query CCDS DB by Nucleotide ID:NM_001378747Re-query CCDS DB by Protein ID:NP_001365676Link to BLAST:NP_001365676.1
Original member Current member NCBI NM_001378748.1 NP_001365677.1 Accepted alive Link to Nucleotide Sequence:NM_001378748.1Link to Protein Sequence:NP_001365677.1Re-query CCDS DB by Nucleotide ID:NM_001378748Re-query CCDS DB by Protein ID:NP_001365677Link to BLAST:NP_001365677.1
Original member Current member NCBI NM_001378749.1 NP_001365678.1 Accepted alive Link to Nucleotide Sequence:NM_001378749.1Link to Protein Sequence:NP_001365678.1Re-query CCDS DB by Nucleotide ID:NM_001378749Re-query CCDS DB by Protein ID:NP_001365678Link to BLAST:NP_001365678.1
Original member Current member NCBI NM_001378750.1 NP_001365679.1 Accepted alive Link to Nucleotide Sequence:NM_001378750.1Link to Protein Sequence:NP_001365679.1Re-query CCDS DB by Nucleotide ID:NM_001378750Re-query CCDS DB by Protein ID:NP_001365679Link to BLAST:NP_001365679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035814.1 953 Q9NQC7-2 953 100% 0 0
NP_001035877.1 953 Q9NQC7-2 953 100% 0 0
NP_001365673.1 953 Q9NQC7-2 953 100% 0 0
NP_001365674.1 953 Q9NQC7-2 953 100% 0 0
NP_001365675.1 953 Q9NQC7-2 953 100% 0 0
NP_001365676.1 953 Q9NQC7-2 953 100% 0 0
NP_001365677.1 953 Q9NQC7-2 953 100% 0 0
NP_001365678.1 953 Q9NQC7-2 953 100% 0 0
NP_001365679.1 953 Q9NQC7-2 953 100% 0 0

Chromosomal Locations for CCDS 42164.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 50749699 50750202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50751604 50751906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50754319 50754424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50776179 50776277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50777825 50777941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50779665 50780044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50781246 50781411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50782325 50782466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50784329 50784451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50786855 50786946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50787786 50787852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50791558 50791690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50792597 50792705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50793546 50793664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50794212 50794428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50796324 50796508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGAGTTCAGGCTTATGGAGCCAAGAAAAAGTCACTTCACCCTACTGGGAAGAGCGGATTTTTTACTTGC
TTCTTCAAGAATGCAGCGTTACAGACAAACAAACACAAAAGCTCCTTAAAGTACCGAAGGGAAGTATAGG
ACAGTATATTCAAGATCGTTCTGTGGGGCATTCAAGGATTCCTTCTGCAAAAGGCAAGAAAAATCAGATT
GGATTAAAAATTCTAGAGCAACCTCATGCAGTTCTCTTTGTTGATGAAAAGGATGTTGTAGAGATAAATG
AAAAGTTCACAGAGTTACTTTTGGCAATTACCAATTGTGAGGAGAGGTTCAGCCTGTTTAAAAACAGAAA
CAGACTAAGTAAAGGCCTCCAAATAGACGTGGGCTGTCCTGTGAAAGTACAGCTGAGATCTGGGGAAGAA
AAATTTCCTGGAGTTGTACGCTTCAGAGGACCCCTGTTAGCAGAGAGGACAGTCTCCGGAATATTCTTTG
GAGTTGAATTGCTGGAAGAAGGTCGTGGTCAAGGTTTCACTGACGGGGTGTACCAAGGGAAACAGCTTTT
TCAGTGTGATGAAGATTGTGGCGTGTTTGTTGCATTGGACAAGCTAGAACTCATAGAAGATGATGACACT
GCATTGGAAAGTGATTACGCAGGTCCTGGGGACACAATGCAGGTCGAACTTCCTCCTTTGGAAATAAACT
CCAGAGTTTCTTTGAAGGTTGGAGAAACAATAGAATCTGGAACAGTTATATTCTGTGATGTTTTGCCAGG
AAAAGAAAGCTTAGGATATTTTGTTGGTGTGGACATGGATAACCCTATTGGCAACTGGGATGGAAGATTT
GATGGAGTGCAGCTTTGTAGTTTTGCGTGTGTTGAAAGTACAATTCTATTGCACATCAATGATATCATCC
CAGAGAGTGTGACGCAGGAAAGGAGGCCTCCCAAACTTGCCTTTATGTCAAGAGGTGTTGGGGACAAAGG
TTCATCCAGTCATAATAAACCAAAGGCTACAGGATCTACCTCAGACCCTGGAAATAGAAACAGATCTGAA
TTATTTTATACCTTAAATGGGTCTTCTGTTGACTCACAACCACAATCCAAATCAAAAAATACATGGTACA
TTGATGAAGTTGCAGAAGACCCTGCAAAATCTCTTACAGAGATATCTACAGACTTTGACCGTTCTTCACC
ACCACTCCAGCCTCCTCCTGTGAACTCACTGACCACCGAGAACAGATTCCACTCTTTACCATTCAGTCTC
ACCAAGATGCCCAATACCAATGGAAGTATTGGCCACAGTCCACTTTCTCTGTCAGCCCAGTCTGTAATGG
AAGAGCTAAACACTGCACCCGTCCAAGAGAGTCCACCCTTGGCCATGCCTCCTGGGAACTCACATGGTCT
AGAAGTGGGCTCATTGGCTGAAGTTAAGGAGAACCCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAG
CCACCAGGACTGAATGAAGTGCTCGCTGGACTGGAACTGGAAGATGAGTGTGCAGGCTGTACGGATGGAA
CCTTCAGAGGCACTCGGTATTTCACCTGTGCCCTGAAGAAGGCGCTGTTTGTGAAACTGAAGAGCTGCAG
GCCTGACTCTAGGTTTGCATCATTGCAGCCGGTTTCCAATCAGATTGAGCGCTGTAACTCTTTAGCATTT
GGAGGCTACTTAAGTGAAGTAGTAGAAGAAAATACTCCACCAAAAATGGAAAAAGAAGGCTTGGAGATAA
TGATTGGGAAGAAGAAAGGCATCCAGGGTCATTACAATTCTTGTTACTTAGACTCAACCTTATTCTGCTT
ATTTGCTTTTAGTTCTGTTCTGGACACTGTGTTACTTAGACCCAAAGAAAAGAACGATGTAGAATATTAT
AGTGAAACCCAAGAGCTACTGAGGACAGAAATTGTTAATCCTCTGAGAATATATGGATATGTGTGTGCCA
CAAAAATTATGAAACTGAGGAAAATACTTGAAAAGGTGGAGGCTGCATCAGGATTTACCTCTGAAGAAAA
AGATCCTGAGGAATTCTTGAATATTCTGTTTCATCATATTTTAAGGGTAGAACCTTTGCTAAAAATAAGA
TCAGCAGGTCAAAAGGTACAAGATTGTTACTTCTATCAAATTTTTATGGAAAAAAATGAGAAAGTTGGCG
TTCCCACAATTCAGCAGTTGTTAGAATGGTCTTTTATCAACAGTAACCTGAAATTTGCAGAGGCACCATC
ATGTCTGATTATTCAGATGCCTCGATTTGGAAAAGACTTTAAACTATTTAAAAAAATTTTTCCTTCTCTG
GAATTAAATATAACAGATTTACTTGAAGACACTCCCAGACAGTGCCGGATATGTGGAGGGCTTGCAATGT
ATGAGTGTAGAGAATGCTACGACGATCCGGACATCTCAGCTGGAAAAATCAAGCAGTTTTGTAAAACCTG
CAACACTCAAGTCCACCTTCATCCGAAGAGGCTGAATCATAAATATAACCCAGTGTCACTTCCCAAAGAC
TTACCCGACTGGGACTGGAGACACGGCTGCATCCCTTGCCAGAATATGGAGTTATTTGCTGTTCTCTGCA
TAGAAACAAGCCACTATGTTGCTTTTGTGAAGTATGGGAAGGACGATTCTGCCTGGCTCTTCTTTGACAG
CATGGCCGATCGGGATGGTGGTCAGAATGGCTTCAACATTCCTCAAGTCACCCCATGCCCAGAAGTAGGA
GAGTACTTGAAGATGTCTCTGGAAGACCTGCATTCCTTGGACTCCAGGAGAATCCAAGGCTGTGCACGAA
GACTGCTTTGTGATGCATATATGTGCATGTACCAGAGTCCAACAATGAGTTTGTACAAATAA

Translation (953 aa):
MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRIPSAKGKKNQI
GLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLSKGLQIDVGCPVKVQLRSGEE
KFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKLELIEDDDT
ALESDYAGPGDTMQVELPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRF
DGVQLCSFACVESTILLHINDIIPESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSE
LFYTLNGSSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSL
TKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQ
PPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPVSNQIERCNSLAF
GGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYY
SETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIR
SAGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSL
ELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKD
LPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNIPQVTPCPEVG
EYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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