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Report for CCDS5018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5018.1 Public Homo sapiens 6 PNRC1 24 110 108 CCDS HistoryNCBI Gene:10957Re-query CCDS DB by CCDS ID:5018.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336032.4 ENSP00000336931.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336032.4Link to Ensembl Protein Viewer:ENSP00000336931.3Re-query CCDS DB by Nucleotide ID:ENST00000336032Re-query CCDS DB by Protein ID:ENSP00000336931
Original member Current member NCBI NM_006813.3 NP_006804.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006813.3Link to Protein Sequence:NP_006804.1Re-query CCDS DB by Nucleotide ID:NM_006813Re-query CCDS DB by Protein ID:NP_006804Link to BLAST:NP_006804.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006804.1 327 Q12796-1 327 100% 0 0

Chromosomal Locations for CCDS 5018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89080895 89081434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89083753 89084196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGACTGTCGTCTCCGTCCCGCAGCGGGAGCCGCTCGTCCTGGGTGGCCGCCTTGCGCCGCTTGGCTTTT
CCTCCCGAGGTTACTTTGGGGCCCTCCCGATGGTGACCACGGCTCCGCCTCCTTTACCCCGGATCCCGGA
CCCCCGGGCACTGCCCCCGACCCTCTTCCTCCCTCATTTCCTAGGGGGAGATGGCCCGTGTCTGACCCCC
CAGCCTCGCGCTCCAGCAGCTCTGCCCAACCGCAGCCTCGCCGTGGCGGGAGGCACTCCTCGGGCAGCGC
CGAAGAAGCGGCGAAAGAAGAAGGTGCGGGCCAGCCCCGCAGGGCAGCTGCCCAGCCGCTTCCACCAGTA
CCAGCAGCACCGGCCGAGTCTGGAGGGCGGCCGGAGCCCCGCGACCGGCCCGAGCGGAGCGCAGGAGGTC
CCGGGCCCGGCCGCCGCCTTGGCCCCGAGTCCTGCAGCCGCAGCCGGCACGGAGGGAGCCAGCCCCGACC
TTGCCCCGCTGCGGCCCGCGGCTCCCGGCCAAACCCCCCTCAGGAAAGAGGTTTTAAAATCAAAGATGGG
AAAATCGGAGAAAATTGCCCTTCCCCATGGCCAGCTTGTTCATGGTATACACTTGTATGAGCAACCAAAG
ATAAACAGACAGAAAAGCAAATATAACTTGCCACTAACCAAGATCACCTCTGCAAAAAGAAATGAAAACA
ACTTTTGGCAGGATTCTGTTTCATCTGACAGAATTCAGAAGCAGGAAAAAAAGCCTTTTAAAAATACCGA
GAACATTAAAAATTCGCATTTGAAGAAATCAGCATTTCTAACTGAAGTGAGCCAAAAGGAAAATTATGCT
GGGGCAAAGTTTAGTGATCCACCTTCTCCTAGTGTTCTTCCAAAGCCTCCTAGTCACTGGATGGGAAGCA
CTGTTGAAAATTCCAACCAAAACAGGGAGCTGATGGCAGTACACTTAAAAACGCTCCTCAAAGTTCAAAC
TTAG

Translation (327 aa):
MTVVSVPQREPLVLGGRLAPLGFSSRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHFLGGDGPCLTP
QPRAPAALPNRSLAVAGGTPRAAPKKRRKKKVRASPAGQLPSRFHQYQQHRPSLEGGRSPATGPSGAQEV
PGPAAALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQLVHGIHLYEQPK
INRQKSKYNLPLTKITSAKRNENNFWQDSVSSDRIQKQEKKPFKNTENIKNSHLKKSAFLTEVSQKENYA
GAKFSDPPSPSVLPKPPSHWMGSTVENSNQNRELMAVHLKTLLKVQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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