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Report for CCDS11859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11859.1 Public Homo sapiens 18 AFG3L2 24 110 108 CCDS HistoryNCBI Gene:10939Re-query CCDS DB by CCDS ID:11859.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269143.8 ENSP00000269143.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269143.8Link to Ensembl Protein Viewer:ENSP00000269143.2Re-query CCDS DB by Nucleotide ID:ENST00000269143Re-query CCDS DB by Protein ID:ENSP00000269143
Original member Current member NCBI NM_006796.3 NP_006787.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006796.3Link to Protein Sequence:NP_006787.2Re-query CCDS DB by Nucleotide ID:NM_006796Re-query CCDS DB by Protein ID:NP_006787Link to BLAST:NP_006787.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006787.2 797 Q9Y4W6 797 100% 0 0

Chromosomal Locations for CCDS 11859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12329565 12329783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12337341 12337535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12340201 12340401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12344132 12344247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12348273 12348383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12351085 12351210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12351306 12351413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12353005 12353158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12356694 12356831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12358670 12358943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12359927 12360051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12363782 12363856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12366965 12367117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12367276 12367382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12370849 12370926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12371592 12371691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12376969 12377082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGCGCACCGCTGTTTGCGGCTGTGGGGCCGGGGCGGCTGCTGGCCCCGCGGCCTACAGCAGCTCCTCG
TGCCTGGCGGCGTGGGCCCGGGCGAGCAGCCCTGCCTCCGGACGCTTTACCGATTTGTTACAACTCAAGC
AAGGGCCAGCAGAAATTCTCTTTTGACAGATATAATTGCTGCTTATCAAAGATTCTGTTCTCGACCCCCA
AAAGGATTTGAAAAATACTTTCCTAATGGAAAAAATGGAAAAAAAGCTAGTGAACCTAAAGAAGTTATGG
GAGAGAAAAAAGAATCAAAGCCAGCTGCTACCACACGCTCTTCTGGAGGAGGAGGTGGTGGCGGTGGAAA
ACGAGGTGGCAAGAAAGATGATTCTCACTGGTGGTCCAGGTTTCAGAAGGGTGACATTCCATGGGACGAC
AAGGATTTCAGGATGTTCTTCCTCTGGACTGCTCTGTTCTGGGGTGGAGTCATGTTTTACTTGCTGCTCA
AGAGATCCGGGAGAGAAATCACTTGGAAGGACTTTGTCAATAACTATCTTTCAAAAGGAGTAGTAGACAG
ATTGGAAGTCGTCAACAAGCGTTTTGTTCGAGTGACCTTTACACCAGGAAAAACTCCTGTTGATGGGCAA
TACGTTTGGTTTAATATTGGCAGTGTGGACACCTTTGAACGGAATCTGGAAACTTTACAGCAGGAATTGG
GCATAGAAGGAGAAAATCGGGTGCCTGTTGTCTACATTGCTGAAAGTGATGGCTCTTTTCTGCTGAGCAT
GCTGCCTACGGTGCTCATCATCGCCTTCTTGCTCTACACCATCAGAAGAGGGCCTGCTGGCATTGGCCGG
ACAGGCCGAGGGATGGGCGGACTCTTCAGTGTCGGAGAAACCACTGCCAAGGTCTTAAAGGATGAAATTG
ATGTGAAGTTCAAAGATGTGGCTGGCTGTGAGGAGGCCAAGCTAGAGATCATGGAATTTGTGAATTTCTT
GAAAAACCCAAAGCAGTATCAAGACCTAGGAGCAAAAATCCCAAAGGGTGCCATTCTCACTGGTCCTCCA
GGCACTGGGAAGACGCTGCTAGCTAAGGCCACAGCCGGAGAAGCCAATGTCCCCTTCATCACCGTTAGTG
GATCTGAGTTTTTGGAGATGTTCGTTGGTGTGGGCCCTGCTAGAGTCCGAGACTTATTTGCCCTTGCTCG
GAAGAATGCCCCTTGCATCCTCTTCATCGATGAAATCGATGCGGTGGGAAGGAAGAGAGGAAGAGGCAAC
TTTGGAGGGCAGAGTGAGCAGGAGAACACACTCAACCAGCTGCTGGTGGAGATGGATGGTTTTAATACAA
CAACAAATGTCGTCATTTTGGCCGGCACCAATCGACCAGATATCCTGGACCCCGCGCTGCTTAGGCCGGG
GCGTTTCGACAGGCAGATCTTTATTGGACCACCAGACATAAAAGGAAGAGCTTCTATTTTCAAAGTTCAT
CTCCGACCGCTAAAACTGGACAGTACCCTGGAGAAGGATAAATTGGCAAGAAAACTGGCATCTTTAACTC
CAGGGTTTTCAGGTGCTGATGTTGCTAATGTCTGTAATGAAGCTGCGTTGATTGCTGCAAGGCATCTGTC
AGATTCCATAAATCAGAAACACTTTGAACAGGCAATTGAACGAGTGATTGGTGGCTTAGAGAAGAAAACG
CAGGTTCTGCAGCCTGAGGAGAAGAAGACTGTGGCATACCACGAAGCAGGCCATGCGGTTGCCGGCTGGT
ATCTGGAGCACGCAGACCCGCTTTTAAAGGTATCCATCATCCCACGTGGCAAAGGACTAGGTTATGCTCA
GTATTTACCAAAAGAACAATACCTCTATACCAAAGAGCAGCTCTTGGATAGGATGTGTATGACTTTAGGT
GGTCGAGTCTCTGAAGAAATCTTCTTTGGAAGAATTACAACTGGTGCTCAAGATGACTTGAGAAAAGTAA
CTCAGAGTGCATATGCCCAAATTGTTCAGTTTGGCATGAATGAAAAGGTTGGGCAAATCTCCTTTGACCT
CCCACGTCAGGGGGACATGGTATTGGAGAAACCTTACAGTGAAGCCACTGCAAGATTGATAGATGATGAA
GTACGAATACTTATTAATGATGCTTATAAAAGAACAGTAGCTCTTCTCACAGAAAAGAAAGCTGACGTGG
AGAAGGTTGCTCTTCTGTTGTTAGAAAAAGAAGTATTAGATAAGAATGATATGGTTGAACTTTTGGGCCC
CAGACCATTTGCGGAAAAATCTACCTATGAAGAATTTGTGGAAGGCACTGGCAGCTTGGATGAGGACACC
TCACTTCCAGAAGGCCTTAAGGACTGGAACAAGGAGCGGGAAAAGGAGAAAGAGGAGCCCCCGGGTGAGA
AAGTTGCCAACTAG

Translation (797 aa):
MAHRCLRLWGRGGCWPRGLQQLLVPGGVGPGEQPCLRTLYRFVTTQARASRNSLLTDIIAAYQRFCSRPP
KGFEKYFPNGKNGKKASEPKEVMGEKKESKPAATTRSSGGGGGGGGKRGGKKDDSHWWSRFQKGDIPWDD
KDFRMFFLWTALFWGGVMFYLLLKRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQ
YVWFNIGSVDTFERNLETLQQELGIEGENRVPVVYIAESDGSFLLSMLPTVLIIAFLLYTIRRGPAGIGR
TGRGMGGLFSVGETTAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPP
GTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGN
FGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVH
LRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKT
QVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYLYTKEQLLDRMCMTLG
GRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDE
VRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRPFAEKSTYEEFVEGTGSLDEDT
SLPEGLKDWNKEREKEKEEPPGEKVAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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