NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16027.1 Public Mus musculus 2 Mmadhc 23 108 98 CCDS HistoryNCBI Gene:109129Re-query CCDS DB by CCDS ID:16027.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102769.10 ENSMUSP00000099830.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102769.10Link to Ensembl Protein Viewer:ENSMUSP00000099830.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102769Re-query CCDS DB by Protein ID:ENSMUSP00000099830
Original member Current member NCBI NM_133839.3 NP_598600.1 Accepted alive Link to Nucleotide Sequence:NM_133839.3Link to Protein Sequence:NP_598600.1Re-query CCDS DB by Nucleotide ID:NM_133839Re-query CCDS DB by Protein ID:NP_598600Link to BLAST:NP_598600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598600.1 296 Q99LS1 296 100% 0 0

Chromosomal Locations for CCDS 16027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 50280208 50280402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 50281103 50281189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 50287795 50287925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 50288927 50289032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 50291285 50291502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 50292809 50292953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 50296252 50296260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGCCCATGTGCTCTGTAACAGAGCCAGACTGGTTTCCTATCTCCCAGGATTTTGTTCTTTAGTGAAAA
GAGTCATCAATCCAAGAGCCTTTTCAACTGCAGGATCTTCAGGTTCTGATGAGTCTCATGTGGCCACCGC
ACCTCCAGATATATGCTCTCGAACAGTGTGGCCTGATGAAACTATGGGACCCTTTGGACCTCAGGACCAG
AGATTCCAGCTTCCTGGGAATATAGGCTTCGATTGTCACCTCAATGGGACTGCCTCACAGAAGAAAAGCC
AGGCCCATAAAACTTTGCCTGATGTTCTAGCAGAGCCTCTTTCAACTGAAAGACACGAGTTTGTGATGGC
GCAGTATGTAAATGAGTTTCAGGATAGTGATGCACCTGTTGAACAAGAAATTAACAGTGCAGAAACTTAC
TTTGAAAGTGCCAAAGTTGAGTGTGCGATCCAGACATGTCCAGAGCTGCTGCGGAGAGATTTTGAGTCAC
TTTTTCCAGAAGTGGCTAATAGCAAACTAATGATCCTGACTGTAACCCAGAAAACTGAAAATGACATGAC
TGTCTGGAGTGAAGAGGTGGAGGTTGAGAGAGAGGTGCTCTTGGAGAAGTTCATCAGTGGTGCTAAGGAG
ATCTGCTATGCCCTTCGGGCTGAAGGATACTGGGCTGACTTCATTGACCCATCATCTGGTGTGGCATTTT
TTGGACCATATACCAACAACACACTTTTTGAAACAGATGAACGGTACCGGCATTTAGGATTCTCAGTTGA
CGACCTTGGCTGCTGTAAAGTGATCCGTCACAGTCTCTGGGGCACTCATGTGGTTGTAGGAAGTATCTTC
ACTAACGCAACAGCAGACAGCAGTATCATGAGGAAGCTCAGTGGAAACTAG

Translation (296 aa):
MAHVLCNRARLVSYLPGFCSLVKRVINPRAFSTAGSSGSDESHVATAPPDICSRTVWPDETMGPFGPQDQ
RFQLPGNIGFDCHLNGTASQKKSQAHKTLPDVLAEPLSTERHEFVMAQYVNEFQDSDAPVEQEINSAETY
FESAKVECAIQTCPELLRRDFESLFPEVANSKLMILTVTQKTENDMTVWSEEVEVEREVLLEKFISGAKE
ICYALRAEGYWADFIDPSSGVAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIF
TNATADSSIMRKLSGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH