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Report for CCDS28495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28495.1 Public Mus musculus 17 Msrb1 23 108 98 CCDS HistoryNCBI Gene:27361Re-query CCDS DB by CCDS ID:28495.1Re-query CCDS DB by GeneID:27361See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 28495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101800.5 ENSMUSP00000099300.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101800.5Link to Ensembl Protein Viewer:ENSMUSP00000099300.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000101800Re-query CCDS DB by Protein ID:ENSMUSP00000099300
Original member Current member EBI ENSMUST00000115262.7 ENSMUSP00000110917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115262.7Link to Ensembl Protein Viewer:ENSMUSP00000110917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115262Re-query CCDS DB by Protein ID:ENSMUSP00000110917
Original member Current member NCBI NM_001346668.1 NP_001333597.1 Accepted alive Link to Nucleotide Sequence:NM_001346668.1Link to Protein Sequence:NP_001333597.1Re-query CCDS DB by Nucleotide ID:NM_001346668Re-query CCDS DB by Protein ID:NP_001333597Link to BLAST:NP_001333597.1
Original member Current member NCBI NM_013759.3 NP_038787.1 Accepted alive Link to Nucleotide Sequence:NM_013759.3Link to Protein Sequence:NP_038787.1Re-query CCDS DB by Nucleotide ID:NM_013759Re-query CCDS DB by Protein ID:NP_038787Link to BLAST:NP_038787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333597.1 116 Q9JLC3 116 100% 0 0
NP_038787.1 116 Q9JLC3 116 100% 0 0

Chromosomal Locations for CCDS 28495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24736708 24736762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24739499 24739647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24740080 24740194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24741906 24741937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 95

Nucleotide Sequence (351 nt):
ATGTCGTTCTGCAGCTTCTTCGGAGGCGAGGTTTTCCAGAATCACTTCGAGCCAGGTGTCTACGTGTGTG
CCAAGTGCAGCTATGAGCTGTTCTCCAGTCACTCGAAGTACGCACACTCATCCCCGTGGCCAGCGTTCAC
TGAAACCATCCACCCAGACAGTGTGACCAAGTGCCCTGAGAAAAACCGACCAGAAGCTTTAAAGGTGTCC
TGTGGCAAGTGTGGCAATGGGTTGGGCCACGAGTTCCTGAATGATGGCCCCAAGCGGGGACAATCAAGAT
TCTGAATATTTAGCAGCTCACTGAAGTTCGTCCCTAAAGGCAAAGAAGCTGCTGCCTCCCAGGGGCACTA
G

Translation (116 aa):
MSFCSFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVS
CGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKGKEAAASQGH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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