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Report for CCDS23957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23957.1 Public Mus musculus 10 Pttg1ip 23 108 98 CCDS HistoryNCBI Gene:108705Re-query CCDS DB by CCDS ID:23957.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009435.11 ENSMUSP00000009435.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009435.11Link to Ensembl Protein Viewer:ENSMUSP00000009435.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000009435Re-query CCDS DB by Protein ID:ENSMUSP00000009435
Original member Current member NCBI NM_145925.3 NP_666037.1 Accepted alive Link to Nucleotide Sequence:NM_145925.3Link to Protein Sequence:NP_666037.1Re-query CCDS DB by Nucleotide ID:NM_145925Re-query CCDS DB by Protein ID:NP_666037Link to BLAST:NP_666037.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666037.1 174 Q8R143 174 100% 0 0

Chromosomal Locations for CCDS 23957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77581822 77581927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77587251 77587303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77589634 77589742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77592846 77593017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77593864 77593910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77597028 77597065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGCGCCTGCTAACCTTGGGCTGACGCCGCACTGGGTGATGCTCCTCGGTGCCGTGCTGCTGTTGCTTC
TGTCCGGAGCCTCCGCGCAGGAACCTCCGAGAGTGGGTTGCTCTGAGTACACAAACAGATCCTGTGAAGA
GTGCCTCAGGAATGTCTCCTGTCTGTGGTGCAATGAGAACAAGGCGTGTATGGACTACCCAGTGAGGAAA
ATCTTGCCCCCTGCTTCTCTCTGTAAATTGAGTTCCGCTCGCTGGGGCGTATGCTGGGTGAACTTCGAGG
CCTTGATCATCACCATGTCGGTCCTGGGGGGCTCTGTGCTCCTGGGCATCACTGTGTGCTGCTGCTACTG
CTGCCGCCGGAAGAAGAGCCGGAAGCCAGACAAGAGCGATGAGCGGGCCATGAGAGAGCAGGAGGAGAGG
AGAGTGCGGCAGGAGGAAAGGAGGGCGGAAATGAAGTCAAGACATGATGAAATCAGGAAAAAATACGGTC
TGTTTAAAGAACAAAACCCGTATGAGAAGTTCTAA

Translation (174 aa):
MAPANLGLTPHWVMLLGAVLLLLLSGASAQEPPRVGCSEYTNRSCEECLRNVSCLWCNENKACMDYPVRK
ILPPASLCKLSSARWGVCWVNFEALIITMSVLGGSVLLGITVCCCYCCRRKKSRKPDKSDERAMREQEER
RVRQEERRAEMKSRHDEIRKKYGLFKEQNPYEKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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