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Report for CCDS3135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3135.1 Public Homo sapiens 3 PLSCR1 24 110 108 CCDS HistoryNCBI Gene:5359Re-query CCDS DB by CCDS ID:3135.1Re-query CCDS DB by GeneID:5359See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3135.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342435.9 ENSP00000345494.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342435.9Link to Ensembl Protein Viewer:ENSP00000345494.4Re-query CCDS DB by Nucleotide ID:ENST00000342435Re-query CCDS DB by Protein ID:ENSP00000345494
Current member NCBI NM_001406034.1 NP_001392963.1 Accepted alive Link to Nucleotide Sequence:NM_001406034.1Link to Protein Sequence:NP_001392963.1Re-query CCDS DB by Nucleotide ID:NM_001406034Re-query CCDS DB by Protein ID:NP_001392963Link to BLAST:NP_001392963.1
Current member NCBI NM_001406035.1 NP_001392964.1 Accepted alive Link to Nucleotide Sequence:NM_001406035.1Link to Protein Sequence:NP_001392964.1Re-query CCDS DB by Nucleotide ID:NM_001406035Re-query CCDS DB by Protein ID:NP_001392964Link to BLAST:NP_001392964.1
Original member Current member NCBI NM_021105.3 NP_066928.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021105.3Link to Protein Sequence:NP_066928.1Re-query CCDS DB by Nucleotide ID:NM_021105Re-query CCDS DB by Protein ID:NP_066928Link to BLAST:NP_066928.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001392963.1 318 O15162-1 318 100% 0 0
NP_001392964.1 318 O15162-1 318 100% 0 0
NP_066928.1 318 O15162-1 318 100% 0 0

Chromosomal Locations for CCDS 3135.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146516045 146516101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146517006 146517167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146521544 146521705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146521833 146522053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146525605 146525647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146528614 146528831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146533470 146533550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146536540 146536552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGACAAACAAAACTCACAGATGAATGCTTCTCACCCGGAAACAAACTTGCCAGTTGGGTATCCTCCTC
AGTATCCACCGACAGCATTCCAAGGACCTCCAGGATATAGTGGCTACCCTGGGCCCCAGGTCAGCTACCC
ACCCCCACCAGCCGGCCATTCAGGTCCTGGCCCAGCTGGCTTTCCTGTCCCAAATCAGCCAGTGTATAAT
CAGCCAGTATATAATCAGCCAGTTGGAGCTGCAGGGGTACCATGGATGCCAGCGCCACAGCCTCCATTAA
ACTGTCCACCTGGATTAGAATATTTAAGTCAGATAGATCAGATACTGATTCATCAGCAAATTGAACTTCT
GGAAGTTTTAACAGGTTTTGAAACTAATAACAAATATGAAATTAAGAACAGCTTTGGACAGAGGGTTTAC
TTTGCAGCGGAAGATACTGATTGCTGTACCCGAAATTGCTGTGGGCCATCTAGACCTTTTACCTTGAGGA
TTATTGATAATATGGGTCAAGAAGTCATAACTCTGGAGAGACCACTAAGATGTAGCAGCTGTTGTTGTCC
CTGCTGCCTTCAGGAGATAGAAATCCAAGCTCCTCCTGGTGTACCAATAGGTTATGTTATTCAGACTTGG
CACCCATGTCTACCAAAGTTTACAATTCAAAATGAGAAAAGAGAGGATGTACTAAAAATAAGTGGTCCAT
GTGTTGTGTGCAGCTGTTGTGGAGATGTTGATTTTGAGATTAAATCTCTTGATGAACAGTGTGTGGTTGG
CAAAATTTCCAAGCACTGGACTGGAATTTTGAGAGAGGCATTTACAGACGCTGATAACTTTGGAATCCAG
TTCCCTTTAGACCTTGATGTTAAAATGAAAGCTGTAATGATTGGTGCCTGTTTCCTCATTGACTTCATGT
TTTTTGAAAGCACTGGCAGCCAGGAACAAAAATCAGGAGTGTGGTAG

Translation (318 aa):
MDKQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYN
QPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVY
FAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTW
HPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQ
FPLDLDVKMKAVMIGACFLIDFMFFESTGSQEQKSGVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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