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Report for CCDS88596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88596.1 Public Mus musculus 14 E330034G19Rik 23 108 98 CCDS HistoryNCBI Gene:105418Re-query CCDS DB by CCDS ID:88596.1Re-query CCDS DB by GeneID:105418See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162224.7 ENSMUSP00000124926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162224.7Link to Ensembl Protein Viewer:ENSMUSP00000124926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162224Re-query CCDS DB by Protein ID:ENSMUSP00000124926
Original member Current member NCBI NM_001346536.1 NP_001333465.1 Accepted alive Link to Nucleotide Sequence:NM_001346536.1Link to Protein Sequence:NP_001333465.1Re-query CCDS DB by Nucleotide ID:NM_001346536Re-query CCDS DB by Protein ID:NP_001333465Link to BLAST:NP_001333465.1

Chromosomal Locations for CCDS 88596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24296023 24296138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24296763 24296946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24297982 24298097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24306826 24306997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24308202 24308317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24309434 24309578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAGAAATTGCATTTGCAACATAAGACACCATGTCACAGCTGCAGACCTGAACAGGAAAACCACTGAGG
CCTCCAAGAACTTGAAGATGCTTGAGGAGGAGATTGGCTTCTATCGCAACCTGCACAGCCAGCTGAGGAT
GGCCCAGGCTCAGCTGAAGAACAAGGTGAATATGCTGAAGCAGGAAAATAGGAGAATTTGGGGGCGATGT
GCCACACTGCAGCAGAACTTGGAGGAATTGAAAATGATCTATAAGAATCAACTGGAGGACACCAGTGACC
CCCAGACCCAGCAGCAGCAGGATCCAGAAAGAACGGAGGAATTGCTGCAGGACAGTCACAAGCAGAAGAA
GCTGGGCATCCAAGAGAAGAATTTAGCAGAAAAACAGCAGTATTACTTTGAGGTGCGCCGGAAGAGCTGC
TTCCTGACAGAGCTGAATCAGTTGAAGAAGAAGCTGGAAATGCTGAGTCAGGAAAACAAGGAAATGCAGG
GGGATTGTGCCCTACTACAGCATCACGTGGAGGACTTGAAACCAATCTATAAGAAGCAACAGGAGGAGGA
CAGTGACCTCCAGACCCAGCACCAAAAGCACATGGAAAGGATGGAGGAAAAGCTGCAGTACATGCTGAAG
AAGAAGAATATGGCCATCAAGCAAAGGGAGTTGGCAGAAAAGCTGAAGTACCAATTTGAGGTCCTGCAAA
TGAGGTTTGATAAATTGCAGCAAGAGATGGAACTGGCCATAGCCCAGGAAGAGAGAGTCCTGCAGAAAGA
CCTGCTACATCAGGAGCCCCCTGCTGAGCCCCATCCCCAGAAACCACAGGATCCCTTGGGTGGGTTTGCT
TTAACATAG

Translation (282 aa):
MRNCICNIRHHVTAADLNRKTTEASKNLKMLEEEIGFYRNLHSQLRMAQAQLKNKVNMLKQENRRIWGRC
ATLQQNLEELKMIYKNQLEDTSDPQTQQQQDPERTEELLQDSHKQKKLGIQEKNLAEKQQYYFEVRRKSC
FLTELNQLKKKLEMLSQENKEMQGDCALLQHHVEDLKPIYKKQQEEDSDLQTQHQKHMERMEEKLQYMLK
KKNMAIKQRELAEKLKYQFEVLQMRFDKLQQEMELAIAQEERVLQKDLLHQEPPAEPHPQKPQDPLGGFA
LT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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