NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46608.1 Public Homo sapiens 20 SPINT3 24 110 108 CCDS HistoryNCBI Gene:10816Re-query CCDS DB by CCDS ID:46608.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217428.7 ENSP00000217428.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217428.7Link to Ensembl Protein Viewer:ENSP00000217428.6Re-query CCDS DB by Nucleotide ID:ENST00000217428Re-query CCDS DB by Protein ID:ENSP00000217428
Original member Current member NCBI NM_006652.2 NP_006643.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006652.2Link to Protein Sequence:NP_006643.1Re-query CCDS DB by Nucleotide ID:NM_006652Re-query CCDS DB by Protein ID:NP_006643Link to BLAST:NP_006643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006643.1 89 P49223 89 100% 0 0

Chromosomal Locations for CCDS 46608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45512651 45512844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45515533 45515608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGCAGCTTCAGGCCTCTCTCTCGTTTCTCCTGATTCTCACTCTCTGCCTAGAGCTTCGATCAGAACTAG
CACGAGACACTATCAAGGATCTCCTCCCAAATGTATGCGCTTTTCCTATGGAAAAGGGCCCTTGTCAAAC
CTACATGACGCGATGGTTTTTCAACTTTGAAACTGGTGAATGTGAGTTATTTGCTTACGGAGGCTGCGGA
GGCAACAGCAACAACTTTTTGAGGAAAGAAAAATGTGAGAAATTCTGCAAGTTCACCTGA

Translation (89 aa):
MQLQASLSFLLILTLCLELRSELARDTIKDLLPNVCAFPMEKGPCQTYMTRWFFNFETGECELFAYGGCG
GNSNNFLRKEKCEKFCKFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH