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Report for CCDS29453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29453.1 Public Mus musculus 19 Pacs1 23 108 98 CCDS HistoryNCBI Gene:107975Re-query CCDS DB by CCDS ID:29453.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025786.8 ENSMUSP00000025786.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025786.8Link to Ensembl Protein Viewer:ENSMUSP00000025786.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025786Re-query CCDS DB by Protein ID:ENSMUSP00000025786
Original member NCBI NM_153129.3 NP_694769.2 Updated not alive Link to Nucleotide Sequence:NM_153129.3Link to Protein Sequence:NP_694769.2Re-query CCDS DB by Nucleotide ID:NM_153129Re-query CCDS DB by Protein ID:NP_694769
Current member NCBI NM_153129.4 NP_694769.2 Accepted alive Link to Nucleotide Sequence:NM_153129.4Link to Protein Sequence:NP_694769.2Re-query CCDS DB by Nucleotide ID:NM_153129Re-query CCDS DB by Protein ID:NP_694769Link to BLAST:NP_694769.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694769.2 961 Q8K212 961 100% 0 0

Chromosomal Locations for CCDS 29453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5134910 5135025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5135120 5135239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5136693 5136919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5138930 5139065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5139280 5139322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5141160 5141202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5141607 5141709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5142244 5142354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5142516 5142670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5143351 5143457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5143775 5143879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5144800 5144935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5145071 5145186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5147127 5147207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5152274 5152367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5152660 5152820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5153664 5153723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5155689 5155769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5155856 5155947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5156357 5156501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5159968 5160093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5160718 5160807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5167924 5168011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5272539 5272888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2886 nt):
ATGGCGGAACGCGGAGGGGCGGGCGGTGGTCCCGGAGGCTCCGGGGGCGGCAGCAGTCAGCGGGGCTCTG
GGGTCGCCCAGTCCCCGCAGCAGCAGCCGCAGCAGCAGCCGCCGCAGCCTCAACAGCCGACGCCCCCCAA
GCTGGCCCAGGCCACCTCGTCCTCCTCGTCCACCTCGGCTGCGGCCGCCTCCTCCTCGTCCTCCTCCACC
TCCACCTCCATGGCCGTCGCGGTGGCCTCGGGCTCTGCGCCTCCGGGCGGTCCAGGACCAGGCCGCACCC
CCGCCCCAGTGCAGATGAATTTGTATGCTACCTGGGAGGTGGACCGGAGCTCATCCAGCTGCGTGCCCAG
GCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTC
ATTGCTGTGAAGCTGCAGGGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCC
TGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGTACCCTCATTTCCTTAAGCGAGATGCCAACAA
ACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCT
GTGGGACTCATCAACATGGCAGAGGTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACA
GCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGA
CCATGAAGGAATCAAGTCTAAGCTGTCTGATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAG
GAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAGGACCTATTCTATGAAGATG
AAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGGCAACCTAA
CATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAGGTGGGCTTTGGGCTAGAA
CACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGT
ACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCT
CAAGCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGC
AGCCTCGGGAAAGACACCACCAGTCCTATGGAGTTGGCTGCTTTAGAAAAAGTCAAATCTACCTGGATTA
AAAACCAAGATGACAGCTTGACTGAAACAGACACTTTAGAAATCACTGACCAGGACATGTTTGGAGATGT
GAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGC
TCTGCCTCTCCCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGC
GACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCA
CAGCACACAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTC
CCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAGTACGTGGCTGAATTGCTTCAAGACC
AGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAG
GATTCAGCGCTACTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAG
AGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTT
ACATGCGCTTCCTCATCATTCCCCTAGGTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAG
ATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAGAG
CCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGG
CTGAAGCCATGTTGACCTGCAGGCATAAGTTCCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCAT
TGGCGTTGTGAAAGTGGGCCTTGTTGAAGACTCGCCCTCCACTGCAGGTGATGGGGACGATTCACCTGTG
GTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCC
CTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGGGAGCCCAAATAGCCCATATGGGGATGT
GATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGAT
GCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGG
AAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAGTGCCCACTAT
CTTCCTGAGCAAGAAGCCCCGAGAAAAGGAGGTGGATTCTAAGAGCCAGGTCATCGAGGGCATCAGCCGC
CTCATCTGTTCTGCAAAGCAGCAGCAAACCATGCTGAGAGTGTCCATCGATGGAGTTGAGTGGAGTGACA
TCAAGTTCTTCCAGCTGGCAGCCCAGTGGCCAACTCATGTCAAGCACTTTCCAGTGGGACTCTTCAGTGG
CAGCAAGACCACCTGA

Translation (961 aa):
MAERGGAGGGPGGSGGGSSQRGSGVAQSPQQQPQQQPPQPQQPTPPKLAQATSSSSSTSAAAASSSSSST
STSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVV
IAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLA
VGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEE
ESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLE
HVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKG
SLGKDTTSPMELAALEKVKSTWIKNQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKADLQG
SASPSKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAAL
PENVILVNTTDWQGQYVAELLQDQRKPVVCTCSTVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQ
SYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSE
PLDVVGRVMQYVNGATTTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPV
VSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGERRREGDKRD
ASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISR
LICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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