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Report for CCDS13506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13506.1 Public Homo sapiens 20 TCFL5 24 110 108 CCDS HistoryNCBI Gene:10732Re-query CCDS DB by CCDS ID:13506.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13506.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335351.8 ENSP00000334294.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335351.8Link to Ensembl Protein Viewer:ENSP00000334294.3Re-query CCDS DB by Nucleotide ID:ENST00000335351Re-query CCDS DB by Protein ID:ENSP00000334294
Original member Current member NCBI NM_006602.4 NP_006593.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006602.4Link to Protein Sequence:NP_006593.2Re-query CCDS DB by Nucleotide ID:NM_006602Re-query CCDS DB by Protein ID:NP_006593Link to BLAST:NP_006593.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006593.2 500 Q9UL49-3 500 100% 0 0

Chromosomal Locations for CCDS 13506.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62841975 62842097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62854016 62854157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62857395 62857638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62859364 62859526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62860125 62860308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62861024 62861670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGTCGGGCCCCGGACCGCGGGAGCCGCCGCCGGAGGCAGGCGCGGCAGGCGGCGAGGCGGCCGTCGAGG
GCGCGGGCGGCGGGGACGCGGCGCTGGGCGAGCCGGGGCTGAGCTTCACGACCACCGACCTGAGCCTGGT
GGAGATGACGGAGGTGGAGTACACGCAGCTGCAGCACATCCTCTGCTCGCACATGGAGGCGGCGGCTGAC
GGCGAGCTCGAGACGCGCCTCAACTCGGCGCTGCTGGCGGCGGCGGGCCCGGGCGCAGGCGCGGGCGGCT
TCGCGGCGGGCGGTCAGGGGGGCGCGGCGCCCGTGTACCCCGTGCTGTGCCCGTCCGCGCTGGCGGCCGA
CGCGCCCTGCCTGGGCCACATCGACTTCCAGGAGCTGCGCATGATGCTGCTAAGCGAGGCGGGCGCGGCG
GAGAAGACGTCGGGCGGCGGGGACGGAGCGAGGGCCCGGGCCGACGGCGCCGCCAAGGAGGGCGCGGGCG
CGGCTGCGGCTGCGGCTGGACCCGACGGCGCGCCCGAGGCCCGGGCCAAGCCGGCCGTGCGCGTCCGCCT
GGAGGACCGCTTCAACAGCATCCCCGCCGAGCCGCCGCCCGCGCCGCGCGGCCCCGAGCCCCCCGAGCCG
GGCGGGGCGCTCAACAATTTGGTAACTCTCATTCGACATCCATCTGAACTAATGAATGTTCCTCTTCAGC
AACAAAACAAATGTACAGCATTAGTGAAAAATAAAACTGCGGCTACAACTACTGCTTTGCAATTTACATA
CCCACTGTTTACTACAAATGCTTGCTCTACTAGTGGAAATTCTAATCTTTCACAGACACAGAGTTCTAGT
AACTCATGTTCTGTACTTGAAGCTGCCAAGCACCAGGATATTGGATTGCCTAGAGCATTTTCTTTCTGTT
ATCAGCAAGAAATTGAATCCACTAAACAGACGTTAGGTAGTAGAAACAAAGTTTTGCCTGAGCAAGTTTG
GATTAAAGTGGGAGAAGCAGCGCTATGCAAACAAGCACTGAAGAGGAATCGGAGTAGAATGCGTCAGTTG
GACACAAATGTAGAGCGAAGAGCCCTTGGAGAGATTCAGAATGTGGGCGAAGGTGCCACCGCCACACAAG
GCGCTTGGCAGTCCTCGGAGTCCTCACAGGCAAACCTGGGGGAGCAGGCCCAGAGTGGGCCCCAGGGAGG
AAGGTCTCAACGTAGGGAGAGGCATAACCGAATGGAAAGAGATAGAAGGCGCAGAATCCGCATTTGCTGT
GATGAGTTGAATCTCTTAGTGCCGTTCTGCAATGCCGAGACTGACAAGGCCACAACTCTGCAGTGGACCA
CAGCATTCCTGAAATACATCCAGGAAAGACATGGAGATTCTCTTAAAAAGGAATTTGAGAGCGTATTTTG
CGGTAAAACTGGCCGAAGGCTAAAGCTGACCAGACCGGACTCCTTGGTGACCTGTCCTGCACAGGGGAGT
TTACAGAGCAGCCCCTCGATGGAGATCAAGTGA

Translation (500 aa):
MSGPGPREPPPEAGAAGGEAAVEGAGGGDAALGEPGLSFTTTDLSLVEMTEVEYTQLQHILCSHMEAAAD
GELETRLNSALLAAAGPGAGAGGFAAGGQGGAAPVYPVLCPSALAADAPCLGHIDFQELRMMLLSEAGAA
EKTSGGGDGARARADGAAKEGAGAAAAAAGPDGAPEARAKPAVRVRLEDRFNSIPAEPPPAPRGPEPPEP
GGALNNLVTLIRHPSELMNVPLQQQNKCTALVKNKTAATTTALQFTYPLFTTNACSTSGNSNLSQTQSSS
NSCSVLEAAKHQDIGLPRAFSFCYQQEIESTKQTLGSRNKVLPEQVWIKVGEAALCKQALKRNRSRMRQL
DTNVERRALGEIQNVGEGATATQGAWQSSESSQANLGEQAQSGPQGGRSQRRERHNRMERDRRRRIRICC
DELNLLVPFCNAETDKATTLQWTTAFLKYIQERHGDSLKKEFESVFCGKTGRRLKLTRPDSLVTCPAQGS
LQSSPSMEIK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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