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Report for CCDS24041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24041.1 Reviewed, update pending Mus musculus 10 Slc39a3 23 108 98 CCDS HistoryNCBI Gene:106947Re-query CCDS DB by CCDS ID:24041.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 24041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168076.1 ENSMUSP00000128256.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168076.1Link to Ensembl Protein Viewer:ENSMUSP00000128256.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168076Re-query CCDS DB by Protein ID:ENSMUSP00000128256
Original member Current member NCBI NM_001358898.2 NP_001345827.2 Accepted alive Link to Nucleotide Sequence:NM_001358898.2Link to Protein Sequence:NP_001345827.2Re-query CCDS DB by Nucleotide ID:NM_001358898Re-query CCDS DB by Protein ID:NP_001345827Link to BLAST:NP_001345827.2
Original member Current member NCBI NM_134135.3 NP_598896.3 Pending alive Link to Nucleotide Sequence:NM_134135.3Link to Protein Sequence:NP_598896.3Re-query CCDS DB by Nucleotide ID:NM_134135Re-query CCDS DB by Protein ID:NP_598896Link to BLAST:NP_598896.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345827.2 317 Q99K24 317 100% 0 0
NP_598896.3 317 Q99K24 317 100% 0 0

Chromosomal Locations for CCDS 24041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81030957 81031700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81033612 81033821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGACGAAGCTTCTGGTGGCCAAGGTCCTCTGCATGGTGGGCGTGTTCTTCTTCATGCTGCTGGGCTCCC
TGCTGCCTGTGAAGGTCATCGAGGCTGACTTGGAGAAGGCGCACCGCTCCAAGAAGGTCCTGTCCCTCTG
CAACACCTTCGGGGGTGGCGTATTCCTGGCTACATGCTTTAATGCACTGCTGCCTGCAGTGAGGGACAAG
CTGCAGCAGGTGCTGAGCCTGGGCCACATCAGCACCGACTACCCGCTGGCGGAGACGCTCATGATGGTGG
GTTTCTTCCTCACTGTGTTCGTGGAGCAGCTGGTGCTGACCTTCCGCCGGGAGCGGCCTCCCTTTATAGA
CCTGGAGACCTTCAACGCCGGCTCAGATGCGGGCAGCGACTCGGAGTACGAGAGCCCGTTCGTGGGTGTG
GGCAACCGTAGCCACAGCCTGTACCCTGAGCCCACAGCGCACACCCATGGCGCGGGGCTGCGGCTGCGGG
AACTGGGCCGCCCAGGGCCTCTGCGGCTGCTCAGCCTGGTCTTCGCGCTGTCTGCACACTCTGTGTTCGA
GGGCCTGGCGCTGGGGCTGCAGGAGGAGGGTGAGCGTGTGGTCAGCCTGTTTGTTGGCGTGGCCATCCAC
GAGACGCTGGTGGCCGTGGCCCTGGGCATCAGCATGGCCCGCAGTGCGGTACCCCTGAGGGATGCGGCCA
AGTTGGCTGTGACCGTGAGCGCCATGATCCCAGTGGGCATTGGGTTGGGCCTGGGCATCGAGAGTGCCCG
CAGCGTGGCCAGCAGTGTGGCATCGGCGCTGCTACAGGGCCTGGCCGGTGGCACCTTCCTGTTTGTCACC
TTCCTGGAGATCCTGGCCAAGGAGCTGGAGGAGAGGAGCGAGCAGCTGCTGAAGGTGCTGTTCCTGGTGC
TGGGCTACGCCGTTCTGGCCGGAATGGTCTTTCTCAAGTGGTGA

Translation (317 aa):
MTKLLVAKVLCMVGVFFFMLLGSLLPVKVIEADLEKAHRSKKVLSLCNTFGGGVFLATCFNALLPAVRDK
LQQVLSLGHISTDYPLAETLMMVGFFLTVFVEQLVLTFRRERPPFIDLETFNAGSDAGSDSEYESPFVGV
GNRSHSLYPEPTAHTHGAGLRLRELGRPGPLRLLSLVFALSAHSVFEGLALGLQEEGERVVSLFVGVAIH
ETLVAVALGISMARSAVPLRDAAKLAVTVSAMIPVGIGLGLGIESARSVASSVASALLQGLAGGTFLFVT
FLEILAKELEERSEQLLKVLFLVLGYAVLAGMVFLKW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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