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Report for CCDS73660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73660.1 Public Homo sapiens 14 RIOX1 24 110 108 CCDS HistoryNCBI Gene:79697Re-query CCDS DB by CCDS ID:73660.1Re-query CCDS DB by GeneID:79697See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73660.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304061.8 ENSP00000477507.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304061.8Link to Ensembl Protein Viewer:ENSP00000477507.1Re-query CCDS DB by Nucleotide ID:ENST00000304061Re-query CCDS DB by Protein ID:ENSP00000477507
Original member Current member NCBI NM_024644.5 NP_078920.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024644.5Link to Protein Sequence:NP_078920.2Re-query CCDS DB by Nucleotide ID:NM_024644Re-query CCDS DB by Protein ID:NP_078920Link to BLAST:NP_078920.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078920.2 641 Q9H6W3-1 641 100% 0 0

Chromosomal Locations for CCDS 73660.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73491018 73492943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGATGGGCTCCAGGCCAGTGCAGGGCCGTTGAGGCGCGGGCGGCCGAAGCGCCGGCGCAAGCCCCAGC
CACACAGCGGGTCGGTCCTGGCCCTGCCCTTGAGGTCCAGGAAGATACGAAAGCAGCTGCGAAGTGTTGT
ATCCCGCATGGCAGCGCTGAGGACGCAGACGCTGCCTAGCGAGAACTCGGAGGAATCGAGGGTGGAGTCG
ACGGCCGACGACCTGGGGGACGCGCTACCCGGTGGGGCGGCGGTGGCGGCCGTCCCGGACGCAGCCCGGC
GAGAGCCATACGGCCACCTGGGGCCCGCAGAGCTGCTGGAGGCCTCGCCCGCCGCGCGCTCCCTGCAGAC
CCCGTCGGCGCGCCTGGTGCCCGCTTCCGCGCCGCCCGCGCGCCTGGTGGAGGTGCCCGCCGCGCCGGTC
CGGGTGGTGGAGACCTCGGCCCTGCTGTGCACCGCGCAACACTTAGCGGCCGTCCAGTCGTCCGGGGCCC
CTGCGACGGCGTCGGGGCCGCAGGTGGATAACACGGGTGGGGAGCCGGCCTGGGACTCCCCGCTGCGGCG
CGTCTTGGCCGAGCTGAACCGCATCCCCAGCAGCCGGCGGCGAGCGGCCCGCCTCTTTGAGTGGCTCATC
GCGCCCATGCCGCCAGATCACTTTTACCGGCGCCTATGGGAGCGCGAGGCGGTGCTGGTGCGGCGGCAGG
ACCACACCTACTACCAGGGACTTTTCTCTACCGCTGACCTGGATTCGATGCTGCGCAACGAGGAGGTGCA
GTTCGGCCAGCATTTGGACGCCGCTCGCTACATCAACGGACGACGCGAGACCCTGAACCCACCCGGCCGC
GCGCTGCCCGCCGCCGCGTGGTCCCTGTACCAGGCCGGCTGCTCCCTGCGTCTCCTCTGTCCGCAGGCTT
TCTCTACTACTGTGTGGCAGTTTTTGGCTGTGCTTCAAGAGCAGTTTGGAAGCATGGCAGGCTCCAACGT
TTACCTCACGCCCCCTAACTCGCAGGGCTTTGCCCCCCACTACGACGACATCGAGGCCTTCGTGCTGCAG
CTGGAAGGTAGGAAACTCTGGCGTGTATACCGACCCCGAGTCCCAACCGAGGAACTGGCTCTGACATCCA
GCCCCAACTTCAGTCAGGACGACCTCGGTGAGCCGGTGCTGCAGACCGTGCTGGAACCTGGAGATTTGCT
GTATTTTCCTCGGGGCTTCATTCACCAAGCTGAATGCCAGGATGGAGTCCACTCTCTGCACCTCACCTTG
TCCACGTACCAGCGCAATACCTGGGGTGACTTCTTAGAGGCCATACTGCCTCTGGCAGTGCAGGCTGCAA
TGGAAGAAAATGTGGAGTTTCGGAGGGGTCTGCCCCGAGACTTCATGGATTACATGGGGGCCCAGCATTC
AGATTCTAAGGATCCGCGAAGAACCGCTTTCATGGAGAAGGTGCGGGTCTTGGTTGCCCGCCTGGGACAC
TTTGCTCCTGTTGATGCTGTGGCCGACCAGCGAGCCAAAGACTTCATTCACGATTCTCTGCCCCCTGTTT
TGACTGATAGGGAGAGGGCACTAAGTGTTTACGGGCTTCCAATTCGCTGGGAGGCTGGAGAACCTGTAAA
CGTGGGGGCCCAGTTGACAACAGAAACAGAAGTCCATATGCTTCAGGATGGGATAGCTCGGCTGGTGGGT
GAGGGGGGCCATTTGTTTCTCTATTACACAGTGGAAAACTCCCGTGTGTATCATCTGGAAGAACCCAAGT
GCTTGGAAATATACCCCCAGCAAGCTGATGCCATGGAACTGTTGCTTGGTTCTTATCCAGAGTTTGTGAG
AGTGGGGGACCTGCCCTGTGACAGTGTGGAGGACCAGCTGTCCTTGGCAACCACGTTGTATGATAAGGGG
CTGCTGCTCACTAAGATGCCTCTAGCCCTAAATTAG

Translation (641 aa):
MDGLQASAGPLRRGRPKRRRKPQPHSGSVLALPLRSRKIRKQLRSVVSRMAALRTQTLPSENSEESRVES
TADDLGDALPGGAAVAAVPDAARREPYGHLGPAELLEASPAARSLQTPSARLVPASAPPARLVEVPAAPV
RVVETSALLCTAQHLAAVQSSGAPATASGPQVDNTGGEPAWDSPLRRVLAELNRIPSSRRRAARLFEWLI
APMPPDHFYRRLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGR
ALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQ
LEGRKLWRVYRPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTL
STYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGH
FAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVG
EGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLGSYPEFVRVGDLPCDSVEDQLSLATTLYDKG
LLLTKMPLALN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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