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Report for CCDS88563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88563.1 Public Mus musculus 14 Abhd6 23 108 98 CCDS HistoryNCBI Gene:66082Re-query CCDS DB by CCDS ID:88563.1Re-query CCDS DB by GeneID:66082See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225234.1 ENSMUSP00000153068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225234.1Link to Ensembl Protein Viewer:ENSMUSP00000153068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225234Re-query CCDS DB by Protein ID:ENSMUSP00000153068
Original member Current member NCBI NM_001331065.1 NP_001317994.1 Accepted alive Link to Nucleotide Sequence:NM_001331065.1Link to Protein Sequence:NP_001317994.1Re-query CCDS DB by Nucleotide ID:NM_001331065Re-query CCDS DB by Protein ID:NP_001317994Link to BLAST:NP_001317994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317994.1 289 Q8R2Y0-2 289 100% 0 0

Chromosomal Locations for CCDS 88563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8039770 8039904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8041119 8041232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8042694 8042826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8045468 8045625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8049574 8049628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8049808 8049908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8055471 8055644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCAAGTTCGCTACGCACACCATGAGGACTATCAGTTCTGTTACTCCTTCCGGGGCAGGCCAGGACACA
AGCCATCCATCCTTATGCTCCATGGATTCTCCGCACACAAGGACATGTGGCTCAGCGTGGTCAAGTTCCT
TCCGAAGAACCTGCACTTGGTCTGTGTGGACATGCCTGGGCATGAAGGCACCACCCGCTCCTCCCTGGAT
GACCTGTCCATAGTGGGGCAAGTTAAAAGGATACATCAGTTTGTAGAATGCCTTAAGCTGAACAAAAAGC
CCTTTCACCTTATAGGCACCTCCATGGGTGGCCACGTGGCTGGAGTATATGCCGCTTACTACCCATCTGA
TGTCTGCAGCCTGTCTCTCGTGTGTCCTGCTGGCCTGCAGTACTCAACTGACAATCCTTTTGTACAACGG
CTCAAAGAGCTGGAGGAGTCAGCTGCCATTCAGAAGATTCCCTTGATCCCATCCACCCCGGAAGAGATGA
GTGAGATGCTGCAGCTCTGCTCCTATGTCCGCTTCAAGGTGCCCCAGCAGATCCTTCAAGGTCTTGTCGA
TGTTCGCATTCCTCATAACAGCTTCTACCGGAAATTGTTTTTGGAAATCGTCAATGAGAAATCCAGATAC
TCTCTGCATGAGAATATGGACAAGATCAAGGTCCCGACACAGATCATTTGGGGGAAACAAGACCAGGTGC
TTGATGTGTCCGGGGCAGACATATTAGCCAAGTCAATCTCTAACTCCCAGGTAGAGGTTCTGGAAAACTG
TGGCCATTCGGTAGTGATGGAGAGACCGAGGAAGACAGCCAAGCTCATTGTCGACTTTTTAGCTTCTGTG
CATAACACAGACAACAAGAAGCTGAACTGA

Translation (289 aa):
MQVRYAHHEDYQFCYSFRGRPGHKPSILMLHGFSAHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSSLD
DLSIVGQVKRIHQFVECLKLNKKPFHLIGTSMGGHVAGVYAAYYPSDVCSLSLVCPAGLQYSTDNPFVQR
LKELEESAAIQKIPLIPSTPEEMSEMLQLCSYVRFKVPQQILQGLVDVRIPHNSFYRKLFLEIVNEKSRY
SLHENMDKIKVPTQIIWGKQDQVLDVSGADILAKSISNSQVEVLENCGHSVVMERPRKTAKLIVDFLASV
HNTDNKKLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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