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Report for CCDS3361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3361.1 Public Homo sapiens 4 MXD4 24 110 108 CCDS HistoryNCBI Gene:10608Re-query CCDS DB by CCDS ID:3361.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3361.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337190.7 ENSP00000337889.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337190.7Link to Ensembl Protein Viewer:ENSP00000337889.2Re-query CCDS DB by Nucleotide ID:ENST00000337190Re-query CCDS DB by Protein ID:ENSP00000337889
Original member Current member NCBI NM_006454.3 NP_006445.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006454.3Link to Protein Sequence:NP_006445.1Re-query CCDS DB by Nucleotide ID:NM_006454Re-query CCDS DB by Protein ID:NP_006445Link to BLAST:NP_006445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006445.1 209 Q14582 209 100% 0 0

Chromosomal Locations for CCDS 3361.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2250544 2250701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2251084 2251246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2252408 2252522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2257982 2258011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2261725 2261824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2261917 2261980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGAGCTGAACTCCCTGCTGATCCTGCTGGAGGCGGCCGAGTACCTGGAGCGCAGGGATCGAGAGGCCG
AGCACGGCTACGCCTCGGTGCTGCCCTTCGACGGCGACTTCGCCAGGGAGAAAACAAAGGCGGCCGGCCT
GGTGCGCAAGGCCCCGAACAACAGGTCTTCACACAACGAGCTAGAAAAGCACAGACGAGCCAAACTCAGG
CTGTACCTTGAGCAGCTCAAGCAACTGGTGCCCCTGGGCCCCGACAGCACCCGCCACACCACGCTGAGCC
TCCTGAAGCGGGCCAAGGTGCACATCAAGAAACTGGAGGAGCAGGACCGCCGGGCACTGAGCATCAAGGA
GCAGCTGCAGCAGGAGCATCGTTTCCTGAAGCGGCGCCTGGAGCAGCTGTCGGTGCAGAGCGTGGAGCGC
GTGCGCACAGATAGCACGGGCTCTGCTGTCTCCACGGACGACTCAGAGCAAGAAGTGGACATAGAGGGCA
TGGAGTTTGGCCCTGGTGAGCTGGACAGTGTTGGCAGCAGCAGTGACGCGGACGACCACTACAGCCTGCA
GAGTGGCACCGGCGGCGACAGTGGCTTCGGGCCCCACTGCCGGCGGCTGGGCCGCCCCGCCCTCTCGTAG

Translation (209 aa):
MELNSLLILLEAAEYLERRDREAEHGYASVLPFDGDFAREKTKAAGLVRKAPNNRSSHNELEKHRRAKLR
LYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRLEQLSVQSVER
VRTDSTGSAVSTDDSEQEVDIEGMEFGPGELDSVGSSSDADDHYSLQSGTGGDSGFGPHCRRLGRPALS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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