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Report for CCDS29861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29861.1 Public Mus musculus 19 Poll 23 108 98 CCDS HistoryNCBI Gene:56626Re-query CCDS DB by CCDS ID:29861.1Re-query CCDS DB by GeneID:56626See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026239.6 ENSMUSP00000026239.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026239.6Link to Ensembl Protein Viewer:ENSMUSP00000026239.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026239Re-query CCDS DB by Protein ID:ENSMUSP00000026239
Original member Current member NCBI NM_001330506.1 NP_001317435.1 Accepted alive Link to Nucleotide Sequence:NM_001330506.1Link to Protein Sequence:NP_001317435.1Re-query CCDS DB by Nucleotide ID:NM_001330506Re-query CCDS DB by Protein ID:NP_001317435Link to BLAST:NP_001317435.1
Original member Current member NCBI NM_020032.3 NP_064416.1 Accepted alive Link to Nucleotide Sequence:NM_020032.3Link to Protein Sequence:NP_064416.1Re-query CCDS DB by Nucleotide ID:NM_020032Re-query CCDS DB by Protein ID:NP_064416Link to BLAST:NP_064416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317435.1 573 Q9QXE2 573 100% 0 0
NP_064416.1 573 Q9QXE2 573 100% 0 0

Chromosomal Locations for CCDS 29861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45552806 45553170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45553509 45553677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45555091 45555219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45555922 45556095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45557715 45558032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45558256 45558415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45558625 45558919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45559580 45559691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGGACCCTCAGGGCATCGTGAAGGCCTTTCCCAAGCGGAAGAAAAGTCATGCAGATCTATCTTCAAAAG
CACTTGCAAAGATTCCCAAAAGGGAGGTGGGAGAAGCTAGAGGATGGCTGAGCTCCCTGAGAGCCCACAT
TATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAG
GTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTC
TCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTG
CCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAGGTCCTTGGATGAA
CCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCC
TTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCA
AGCCCAGCTCAGCTCAGAGGATGAAACCAGCGATGGAGAAGGGCCCCAGGTTAGCTCAGCAGATCTGCAA
GCCTTGATCACTGGGCACTACCCCACTCCCCCTGAGGAAGATGGTGGGCCTGACCCAGCACCAGAAGCTC
TGGATAAATGGGTCTGTGCACAGCCCTCGAGCCAGAAGGCAACTAACTACAATCTGCACATCACAGAGAA
GCTGGAAGTGCTGGCTAAAGCCTACAGTGTCCAGGGAGACAAGTGGAGGGCCCTGGGCTATGCAAAGGCC
ATCAATGCTCTCAAGAGCTTCCACAAGCCTGTCAGCTCCTACCAGGAGGCCTGTAGCATCCCGGGAATTG
GCAAGCGGATGGCGGAGAAGGTCATGGAGATCCTGGAGAGTGGGCATCTGCGGAAGCTAGACCACATCAG
TGACAGTGTGCCTGTCTTGGAGCTCTTCTCCAACATCTGGGGAGCTGGGACGAAGACTGCCCAGATGTGG
TACCATCAGGGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTG
GCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACGGT
CCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAG
ATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCT
GCCTCCTTGATAGCCTTCGGCAGCAAGGGTTCCTCACAGATGACTTGGTGAGCCAGGAGGAGAACGGCCA
ACAGCAGAAATACCTGGGTGTGTGCCGGCTCCCAGGGCCCGGGAAGCGCCACCGGCGACTGGACATCATC
GTGGTACCCTACTGTGAGTTTGCCTGTGCCCTGCTCTACTTCACCGGCTCTGCCCACTTCAACCGGTCCA
TGAGAGCTCTGGCCAAGACCAAGGGCATGAGCCTGTCGGAGCATGCGCTCAGTGCAGCTGTAGTCCGGAA
CAGCCAAGGTGTCAAGGTGGGGCCTGGACAAGTGCTGCCCACCCCCACGGAGAAGGACGTCTTCAAGCAC
TTAGGCCTGCCCTACCGGGAGCCAGCTGAACGGGACTGGTGA

Translation (573 aa):
MDPQGIVKAFPKRKKSHADLSSKALAKIPKREVGEARGWLSSLRAHIMPAGIGRARAELFEKQIIHHGGQ
VCSAQAPGVTHIVVDEDMDYERALRLLRLPQLPPGAQLVKSTWLSLCLQEGRLTDTEGFSLPMPKRSLDE
PQPSKSGQDASAPGTQRDLPRTTLSLSPPHTRAVSPPPTAEKPSRTQAQLSSEDETSDGEGPQVSSADLQ
ALITGHYPTPPEEDGGPDPAPEALDKWVCAQPSSQKATNYNLHITEKLEVLAKAYSVQGDKWRALGYAKA
INALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHISDSVPVLELFSNIWGAGTKTAQMW
YHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFLDRMPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGK
MTCGDVDVLITHPDGRSHRGIFSCLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGKRHRRLDII
VVPYCEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGPGQVLPTPTEKDVFKH
LGLPYREPAERDW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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