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Report for CCDS35086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35086.1 Public Homo sapiens 9 SMC2 24 110 108 CCDS HistoryNCBI Gene:10592Re-query CCDS DB by CCDS ID:35086.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35086.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286398.11 ENSP00000286398.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286398.11Link to Ensembl Protein Viewer:ENSP00000286398.7Re-query CCDS DB by Nucleotide ID:ENST00000286398Re-query CCDS DB by Protein ID:ENSP00000286398
Original member Current member EBI ENST00000374787.7 ENSP00000363919.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374787.7Link to Ensembl Protein Viewer:ENSP00000363919.3Re-query CCDS DB by Nucleotide ID:ENST00000374787Re-query CCDS DB by Protein ID:ENSP00000363919
Original member Current member EBI ENST00000374793.8 ENSP00000363925.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374793.8Link to Ensembl Protein Viewer:ENSP00000363925.3Re-query CCDS DB by Nucleotide ID:ENST00000374793Re-query CCDS DB by Protein ID:ENSP00000363925
Original member Current member NCBI NM_001042550.2 NP_001036015.1 Accepted alive Link to Nucleotide Sequence:NM_001042550.2Link to Protein Sequence:NP_001036015.1Re-query CCDS DB by Nucleotide ID:NM_001042550Re-query CCDS DB by Protein ID:NP_001036015Link to BLAST:NP_001036015.1
Original member Current member NCBI NM_001042551.2 NP_001036016.1 Accepted alive Link to Nucleotide Sequence:NM_001042551.2Link to Protein Sequence:NP_001036016.1Re-query CCDS DB by Nucleotide ID:NM_001042551Re-query CCDS DB by Protein ID:NP_001036016Link to BLAST:NP_001036016.1
Original member Current member NCBI NM_001265602.2 NP_001252531.1 Accepted alive Link to Nucleotide Sequence:NM_001265602.2Link to Protein Sequence:NP_001252531.1Re-query CCDS DB by Nucleotide ID:NM_001265602Re-query CCDS DB by Protein ID:NP_001252531Link to BLAST:NP_001252531.1
Original member Current member NCBI NM_006444.3 NP_006435.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006444.3Link to Protein Sequence:NP_006435.2Re-query CCDS DB by Nucleotide ID:NM_006444Re-query CCDS DB by Protein ID:NP_006435Link to BLAST:NP_006435.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036015.1 1197 O95347-1 1197 100% 0 0
NP_001036016.1 1197 O95347-1 1197 100% 0 0
NP_001252531.1 1197 O95347-1 1197 100% 0 0
NP_006435.2 1197 O95347-1 1197 100% 0 0

Chromosomal Locations for CCDS 35086.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104095385 104095552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104096148 104096297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104098446 104098568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104099644 104099682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104100093 104100203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104100389 104100433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104101960 104102193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104102424 104102573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104111581 104111814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104113316 104113475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104113964 104114081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104114691 104114829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104116200 104116319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104118171 104118375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104120027 104120162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104123108 104123232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104124912 104125105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104126641 104126784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104127286 104127480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104129645 104129845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104132009 104132125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104134415 104134575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104138018 104138165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104139139 104139315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3594 nt):
ATGCATATTAAGTCAATTATTCTAGAGGGATTCAAGTCCTATGCTCAGAGGACCGAAGTCAATGGTTTTG
ACCCCCTCTTCAATGCTATCACTGGCTTAAATGGTAGTGGGAAATCCAACATATTGGACTCCATCTGCTT
TTTGCTGGGCATCTCCAACCTGTCTCAGGTTCGGGCTTCTAATTTACAAGATTTAGTTTACAAAAATGGG
CAGGCTGGTATTACCAAAGCCTCTGTGTCAATCACTTTTGATAATTCTGACAAAAAGCAAAGTCCTTTAG
GATTTGAGGTTCATGATGAAATCACAGTAACAAGGCAGGTGGTTATTGGTGGTAGAAATAAATATTTAAT
CAATGGAGTCAATGCCAACAACACCAGAGTACAGGATCTCTTCTGTTCTGTTGGCCTTAATGTTAACAAC
CCTCACTTTCTCATCATGCAGGGCCGAATTACAAAAGTATTGAATATGAAACCTCCAGAGATTTTATCCA
TGATAGAAGAAGCAGCTGGAACCAGGATGTATGAATACAAAAAAATAGCTGCACAGAAAACTATAGAAAA
AAAGGAGGCTAAGCTGAAAGAAATTAAGACGATACTTGAAGAAGAGATTACTCCAACCATTCAAAAATTA
AAAGAGGAAAGATCGTCCTACTTGGAGTACCAAAAAGTAATGAGAGAAATAGAACATTTGAGTCGTTTAT
ATATTGCTTATCAGTTTTTGCTGGCTGAAGATACCAAAGTACGCTCAGCTGAGGAATTAAAAGAAATGCA
AGATAAAGTTATAAAGCTTCAGGAAGAATTGTCTGAGAATGATAAAAAAATAAAAGCACTTAATCATGAA
ATAGAAGAATTGGAAAAAAGAAAAGATAAGGAAACTGGAGGTATACTTCGATCTTTAGAAGATGCTCTTG
CAGAGGCTCAGCGAGTTAATACTAAATCTCAAAGCGCATTTGATCTCAAGAAGAAAAATCTGGCATGTGA
GGAAAGCAAACGCAAAGAGCTGGAAAAAAATATGGTTGAGGACTCAAAAACTTTAGCAGCAAAGGAAAAA
GAGGTTAAAAAGATAACAGATGGACTGCATGCCCTTCAAGAAGCAAGTAATAAAGATGCTGAAGCTCTGG
CAGCTGCACAGCAGCACTTCAATGCTGTTTCCGCTGGCCTGTCCAGTAATGAAGATGGAGCAGAAGCAAC
TCTTGCTGGTCAAATGATGGCCTGTAAAAATGATATAAGTAAAGCTCAGACAGAAGCCAAACAGGCTCAG
ATGAAGTTGAAGCATGCTCAACAGGAATTAAAGAATAAACAAGCTGAAGTTAAGAAGATGGATAGTGGCT
ACAGGAAGGATCAAGAAGCTCTAGAAGCTGTAAAAAGACTTAAAGAAAAACTTGAAGCTGAAATGAAAAA
GCTAAATTATGAAGAAAATAAAGAGGAAAGCCTTTTGGAAAAGCGCAGGCAGCTGTCTCGTGATATTGGT
AGATTGAAAGAAACATATGAAGCTCTATTAGCCAGATTTCCCAATCTTCGATTTGCATACAAGGATCCAG
AGAAGAACTGGAATAGAAATTGTGTGAAAGGACTTGTGGCTTCTCTGATTAGTGTGAAAGACACTTCTGC
AACCACAGCTTTAGAATTAGTGGCTGGAGAACGACTCTACAATGTTGTAGTAGACACAGAAGTTACTGGT
AAAAAGCTACTAGAAAGGGGGGAACTGAAACGTCGATACACTATAATTCCACTCAATAAAATTTCAGCCA
GATGTATTGCACCAGAAACTCTGAGAGTTGCTCAGAATCTTGTTGGCCCTGACAACGTTCATGTGGCTCT
TTCCTTGGTTGAATATAAACCAGAACTTCAGAAAGCAATGGAGTTTGTCTTTGGAACAACATTTGTTTGT
GACAATATGGATAATGCCAAAAAAGTGGCCTTTGATAAGAGGATAATGACTAGAACTGTAACTCTCGGAG
GTGATGTGTTTGATCCTCATGGGACATTGAGTGGAGGTGCTCGATCCCAGGCAGCTTCCATTTTAACCAA
GTTTCAAGAACTCAAAGATGTTCAGGATGAACTGAGAATCAAAGAGAATGAGCTGCGGGCTCTAGAAGAG
GAATTAGCAGGTCTTAAAAACACTGCTGAAAAGTATCGCCAACTAAAACAGCAGTGGGAGATGAAAACTG
AAGAGGCAGATTTATTACAAACCAAGCTCCAGCAAAGCTCATATCACAAGCAACAAGAAGAATTAGATGC
CCTTAAAAAAACCATTGAGGAAAGTGAGGAGACTTTGAAAAACACTAAAGAAATCCAAAGAAAAGCAGAA
GAAAAATATGAAGTATTGGAAAATAAAATGAAAAATGCAGAAGCTGAAAGAGAGCGAGAACTGAAAGATG
CTCAGAAAAAACTGGATTGTGCCAAAACAAAGGCAGATGCATCTAGCAAGAAGATGAAAGAAAAACAACA
GGAAGTTGAAGCTATCACTCTGGAACTGGAAGAGCTCAAGAGAGAGCATACATCTTACAAACAACAGCTT
GAAGCTGTAAATGAAGCTATCAAATCCTATGAAAGTCAGATTGAAGTAATGGCAGCTGAGGTGGCTAAAA
ATAAGGAGTCAGTAAATAAAGCTCAAGAAGAGGTGACCAAGCAAAAAGAGGTGATAACAGCCCAAGACAC
TGTAATTAAAGCTAAATATGCAGAAGTGGCAAAACACAAGGAGCAAAACAATGATTCTCAGCTTAAAATT
AAGGAATTAGACCACAACATCAGCAAACATAAACGGGAGGCTGAAGATGGTGCTGCAAAGGTATCCAAAA
TGTTGAAAGATTATGACTGGATTAATGCAGAGAGACACCTCTTTGGCCAACCCAATAGTGCCTATGATTT
CAAAACTAACAACCCTAAAGAAGCTGGTCAGAGACTTCAGAAGTTGCAAGAAATGAAGGAGAAACTAGGA
AGAAATGTCAATATGAGAGCTATGAATGTATTGACAGAAGCTGAAGAGCGATACAATGACTTGATGAAGA
AGAAGAGAATTGTAGAAAATGACAAATCCAAAATTCTTACAACTATAGAAGACCTTGACCAGAAGAAAAA
CCAAGCCCTAAATATTGCATGGCAAAAGGTGAACAAGGACTTTGGGTCTATTTTTTCTACTCTTTTGCCT
GGTGCTAATGCTATGCTTGCACCACCAGAGGGTCAAACTGTTTTGGATGGTCTGGAGTTCAAGGTTGCCT
TGGGAAATACCTGGAAAGAAAACCTAACTGAACTTAGTGGTGGTCAGAGGTCTTTAGTGGCCTTGTCATT
AATACTGTCCATGCTTCTCTTCAAACCTGCTCCAATTTATATCCTTGATGAGGTAGATGCAGCCTTGGAT
CTTTCTCATACCCAAAACATTGGACAGATGCTGCGTACTCATTTCACACATTCTCAGTTCATTGTGGTGT
CACTAAAAGAAGGTATGTTCAACAATGCAAACGTTCTTTTCAAAACCAAGTTTGTGGATGGTGTTTCTAC
AGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATTTCAAAGGAAGCAAAATCCAAGGCAAAACCACCC
AAAGGAGCACATGTGGAAGTTTAA

Translation (1197 aa):
MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNG
QAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNN
PHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEITPTIQKL
KEERSSYLEYQKVMREIEHLSRLYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNHE
IEELEKRKDKETGGILRSLEDALAEAQRVNTKSQSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEK
EVKKITDGLHALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQMMACKNDISKAQTEAKQAQ
MKLKHAQQELKNKQAEVKKMDSGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLEKRRQLSRDIG
RLKETYEALLARFPNLRFAYKDPEKNWNRNCVKGLVASLISVKDTSATTALELVAGERLYNVVVDTEVTG
KKLLERGELKRRYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVEYKPELQKAMEFVFGTTFVC
DNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGGARSQAASILTKFQELKDVQDELRIKENELRALEE
ELAGLKNTAEKYRQLKQQWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAE
EKYEVLENKMKNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQL
EAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVAKHKEQNNDSQLKI
KELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNPKEAGQRLQKLQEMKEKLG
RNVNMRAMNVLTEAEERYNDLMKKKRIVENDKSKILTTIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLP
GANAMLAPPEGQTVLDGLEFKVALGNTWKENLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALD
LSHTQNIGQMLRTHFTHSQFIVVSLKEGMFNNANVLFKTKFVDGVSTVARFTQCQNGKISKEAKSKAKPP
KGAHVEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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