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Report for CCDS49196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49196.1 Public Mus musculus 12 Tedc1 23 108 98 CCDS HistoryNCBI Gene:104732Re-query CCDS DB by CCDS ID:49196.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049271.12 ENSMUSP00000035351.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049271.12Link to Ensembl Protein Viewer:ENSMUSP00000035351.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049271Re-query CCDS DB by Protein ID:ENSMUSP00000035351
Original member Current member NCBI NM_134041.3 NP_598802.2 Accepted alive Link to Nucleotide Sequence:NM_134041.3Link to Protein Sequence:NP_598802.2Re-query CCDS DB by Nucleotide ID:NM_134041Re-query CCDS DB by Protein ID:NP_598802Link to BLAST:NP_598802.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598802.2 420 Q3UK37 420 100% 0 0

Chromosomal Locations for CCDS 49196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113156437 113156571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113156675 113156753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113157161 113157363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113157578 113157727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113158069 113158167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113161303 113161389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113161713 113161892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113163053 113163382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGCGGCGGCGGCGGAGCCGGGTGGAAGGGGCTGCCCGGGCCCTGCCTGAGGCTGTCGCCGCGCTGAGTC
GGTGCCTGCCTGCTGGGCCCAGCCCAGAAATCTTCCGCCGCGCCAAGTTCGATCGACCTGAGGCGGCTCC
AGTGCTCTGGCAGCTTCTCTTGCGCGTGCTCTCACCGCTTGCTGCAAACAATACCTGGACCGACCTTGCC
CCAGAGGCCCAAGCCTGTGTGGTGAAATCAGCACTGGGCTCCCAAGGCTACCCCAGGTCTGTGCTGCTAC
AATTTCCAGACGGCAGTTCTCAGGGAAGCCGGGAACTGCTGTTGGCCCTGTCTTGGCTCCTCGCCCGAGG
ACCCTTGCTTGAGCAGCTGCTTGCCCAGACCCGTGTGCAGCTGGGTGACCAGTTGCCCCAGTGGGAGGCC
CCAACCAGTCCTGGTCCTCCTGCACCCTTTGTGGAACCAAAGAGCCCCGTGGATCTCCGACTAGTGGAAT
GGCTGATGGGAAGGCTGCGGTTTAGGTGGCGATGCCTGATCTCTAGTCAGCAGGAGCAGTGTATCCTCCT
CAGCAAGATCCACCTGTACACGCAGGGATGCCACAGCCAACAGAGCCTTGGCCATCTTTCTGTTGCCGAA
ACAGAGATGCTTAGAGATCCAGAGAGCGGTCAGCAGCTTCTGCAAGCACTGGAGAGTGAGAACATCCGCC
TGGAGGCAGCTCTGGAGTGGCGGCGCCGTGAGCTGGTGTTCTGGCAGTGGATGGATACAGTTTTGGATAC
CTGTTCCCCTGAGACTCCTGCTGTGACATCCCAGCCAACATTCCTGCCCGAGATCTCTGAAGGTGGGCTT
GGTGAGCTGGAGTCCGTTAAACAAGAGTTGCAGGCCCTGCAGGAGGAGCTACGGGAAGTGTCTGAGCCCC
GGCGGGCTGCGTGGGAAGCCCGGGTTGGAGGCCTAGGTCAGGGGCCAGAATGGAGCAACTCAAGGAAGGC
CCTACAGGAGGCTGTCCAGCAGGAGTTGGCAGCCCTGCAGGGGTCCTGGGAGCAATCCAGTACCCCTGGC
CAGCCACAAAGACCCCATCGACTGGTGAGAAGTAAAGATGGGGCACCAAGACCCCAAGGCCTACAGGCAG
CCGAGGTGATCAGGACACTGAGCGCCAAGGAGGCCTGTCTGAAGAAGGCGTTGCACCAACTGCAGCGGCA
ATGTCAGCAGGAGCTAGCCAGGCTGGCTGGTGCTCTGCCTGGCTTGATTTGGATTCTGCCTCCTGAACAC
TGA

Translation (420 aa):
MRRRRSRVEGAARALPEAVAALSRCLPAGPSPEIFRRAKFDRPEAAPVLWQLLLRVLSPLAANNTWTDLA
PEAQACVVKSALGSQGYPRSVLLQFPDGSSQGSRELLLALSWLLARGPLLEQLLAQTRVQLGDQLPQWEA
PTSPGPPAPFVEPKSPVDLRLVEWLMGRLRFRWRCLISSQQEQCILLSKIHLYTQGCHSQQSLGHLSVAE
TEMLRDPESGQQLLQALESENIRLEAALEWRRRELVFWQWMDTVLDTCSPETPAVTSQPTFLPEISEGGL
GELESVKQELQALQEELREVSEPRRAAWEARVGGLGQGPEWSNSRKALQEAVQQELAALQGSWEQSSTPG
QPQRPHRLVRSKDGAPRPQGLQAAEVIRTLSAKEACLKKALHQLQRQCQQELARLAGALPGLIWILPPEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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