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Report for CCDS87376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87376.1 Public Homo sapiens 6 SCAND3 24 110 108 CCDS HistoryNCBI Gene:114821Re-query CCDS DB by CCDS ID:87376.1Re-query CCDS DB by GeneID:114821See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646382.1 ENSP00000494942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646382.1Link to Ensembl Protein Viewer:ENSP00000494942.1Re-query CCDS DB by Nucleotide ID:ENST00000646382Re-query CCDS DB by Protein ID:ENSP00000494942
Original member Current member NCBI NM_001329616.2 NP_001316545.1 Accepted alive Link to Nucleotide Sequence:NM_001329616.2Link to Protein Sequence:NP_001316545.1Re-query CCDS DB by Nucleotide ID:NM_001329616Re-query CCDS DB by Protein ID:NP_001316545Link to BLAST:NP_001316545.1

Chromosomal Locations for CCDS 87376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28571911 28573827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28574644 28576136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28579272 28579386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3525 nt):
ATGGAAGAAATGATCCCTCTGGATTCTGCAAAGGAGTCTTTAGGCACCCAGCTTCAGTCTATGGAAGATA
GA
ATGGAATGTGAATCTCCAGAGCCACACCCACTTCAAGATAATGGGTCATTTTTGTGGTTTTCCATGAT
G
TCTCAAAGCATGGGTGGTGATAACCTCAGTAGCTTAGATACTAATGAAGCAGAAATTGAACCAGAAAAC
ATG
AGAGAAAAGTTCTTCAGAAGCTTAGCAAGGTTACTGGAAAACAAAAGTAATAATACTAAGATATTTT
CT
AAAGCAAAGTACTGTCAGTTGATAAAGGAAGTGAAAGAAGCTAAAGCTAAGGCGAAAAAGGAATCAGT
T
GACTACCGTCGCTTGGCTAGATTTGATGTTATCCTTGTACAAGGAAATGAGAAGCTAATTGAGGCTGTA
AAT
GGGGAAACAGATAAAATACGGTATTACTTACACAGTGAGGACTTATTTGACATTCTGCATAATACAC
AT
CTCAGCATTGGACATGGTGGACGTACTCGCATGGAGAAAGAGTTACAAGCGAAATACAAGAACATCAC
A
AAAGAAGTTATAATGCTGTATCTGACCCTCTGTAAACCATGCCAACAGAAAAATTCAAAACTCAAGAAG
GTT
CTAACATCAAAATCAATTAAGGAAGTTAGTTCAAGATGCCAAGTAGATCTTATAGACATGCAGTTGA
AT
CCTGATGGGGAGTACAGATTTATTTTGCATTATCAAGATCTCTGTACAAAGTTAACTTTTTTGCGGTC
A
TTAAAGTCTAAAAGGCCTACGGAAGTTGCACATGCTCTTTTAGATATATTTACAATTATTGGAGCACCC
AGT
GTCCTACAATCTGACAATGGGAGGGAATTTTCAAGCCAGGTTGTCAGTGAACTCAGTAATATTTGGC
CA
GAATTGAAAATTGTCCATGGGAAGTCTCAGACCTGCCAAAGCCAGAGTTCTGCAGAACAAACTGAGGA
T
ATCCGAAAGAGGATTTTCTCCTGGATGCAAACTAACAACTCATCACACTGGACTGAATTTTTGTGGTTC
ATT
CAGATGTCCCAAAATCAGCCCTATCACAGAAGCATGCAACAGACTCCATGTGAAAGTGCATTTAGCT
CT
GAAGCTAAACTGGGCTTGTCCCATTCTCAGCTAACTGAAGAACTTGTTGCCAGCTTGCATACAGAAAA
T
GAATTAGATCAGGCTGACAAAGAGTTAGAAAATACTTTAAGAGCCCAGTATGAAGAAAACATTGAGACT
GGA
ACAGACAGTAGTGATATTGAAGAGAATCTTTCTGTCACTCCTAAGGTGGCTGAAAAAAGCCCTCCTG
AG
AGCAGACTAAGATTTTTATCCTGTGTAGTTTGTGAAAAAGAATGCACAGGTGTTAATAGTTGTATATC
A
TGTGATGGAAATATCCATGCAATTTGTGGAGTGCCCTCTCAACATGGGACTGAGGGCTGTGGTCGGCAA
ATA
ACTTGTAGCCTTTGCTATGAAACCAGCACAATGAAGAGGAAACATGATGAGATTCAAAGAAGTTTGC
CT
GTTAAACCTTCCAAAATGCTAAAGCCATCAGGGACACCATTTTCACCAGACAAAGTAGGAGACTGGAT
G
GCGAAACAAGCTTCACTGGACTTTTTTGTCAAGAAAAGACATGCCTTTTCTGAACACAGTAGTAGTAAT
AAA
AGAAATGTTAACAATAGAAGTTATCCTGAAGAAGGGAAAACCAAAAGAGTTCATGCTAGTTTCACTC
GG
AAATATGATCCTTCATATATTGAGTTTGGTTTTGTAGCTGTAATTGATGGTGAAGTACTAAAACCACA
G
TGTATTATTTGTGGAGATGTACTGGCTAATGAAGCAATGAAACCATCAAAACTTAAGCGACATTTATAT
TCA
AAACATAAAGAAATAAGTTCACAACCAAAAGAATTCTTTGAAAGAAAGAGTAGTGAATTGAAAAGCC
AA
CCAAAGCAGGTGTTCAACGTTTCTCATATAAACATTAGTGCTTTGCGGGCTTCATATAAAGTAGCACT
T
CCGGTTGCCAAGTCTAAAACACCATACACAATTGCTGAGACACTAGTGAAAGACTGCATCAAAGAAGTT
TGC
TTGGAAATGTTGGGTGAATCTGCAGCAAAGAAGGTAGCTCAGGTACCACTTTCCAATGACACCATAG
CT
CGACGTATTCAGGAACTGGCTAATGATATGGAAGATCAACTCATAGAACAAATAAAACTAGCAAAGTA
T
TTTTCATTGCAACTTGATGAATGCAGAGATATTGCTAACATGATAATTCTTTTAGTCTATGTGAGGTTT
GAA
CATGATGATGATATAAAGGAAGAGTTCTTTTTTTCAGCCTCTTTGCCTACAAACACAACTAGCTCAG
AA
CTGTATGAAGCTGTAAAGAATTATATTGTTAACAAATGTGGTTTGGAATTTAAATTTTGTGTAGGAGT
A
TGTTCTGATGGTGCAGCTTCAATGACAGGAAAACATTCTGAAGTGGTAACCCAGATTAAGGAACTTGCG
CCA
GAATGTAAAACAACACATTGCTTCATTCATCGAGAAAGTCTTGCCATGAAAAAAATATCAGCTGAAC
TA
AATAGTGTACTTAATGATATAGTAAAAATTGTGAATTATATAAAATCTAATTCATTGAATTCAAGATT
A
TTCTCTTTATTATGTGATAATATGGAAGCTGATCATAAGCAACTGTTACTGCATGCTGAGATACGGTGG
TTA
TCACGGGGAAAAGTTCTGTCAAGAATGTTTGAAATACGAAATGAACTCTTAGTGTTTCTGCAAGGCA
AG
AAACCCATGTGGTCCCAACTTTTTAAAGATGTGAATTGGACAGCCAGACTTGCTTATTTGTCTGATAT
C
TTCAGTATTTTTAATGATCTTAATGCTTCTATGCAAGGGAAGAATGCAACTTATTTTTCAATGGCAGAT
AAA
GTTGAAGGACAAAAACAGAAGTTAGAAGCTTGGAAAAACAGAATTTCTACAGATTGTTATGACATGT
TT
CATAATTTAACAACAATTATCAATGAAGTAGGTAATGATCTTGATATTGCACATCTGCGAAAAGTTAT
C
AGTGAACATCTTACAAATTTGTTAGAATGTTTTGAATTTTATTTTCCATCAAAAGAAGATCCACGCATA
GGA
AATTTGTGGATCCAAAATCCATTTCTTTCATCAAAAGATAACTTAAATTTAACTGTAACTCTACAGG
AT
AAGTTGTTGAAGCTGGCTACCGACGAAGGATTGAAAATCAGTTTTGAAAATACAGCATCACTTCCTTC
A
TTTTGGATAAAAGCTAAAAATGACTATCCTGAGCTTGCTGAGATTGCTTTAAAATTGCTGCTTCTTTTC
CCC
TCAACATACCTCTGTGAGACCGGATTCTCTACTTTAAGTGTTATTAAAACAAAACATAGAAACAGTT
TA
AATATACATTATCCCCTGAGGGTAGCATTGTCATCAATCCAACCTAGATTAGACAAATTAACAAGCAA
G
AAGCAAGCTCACTTATCACATTAA


Translation (1174 aa):
MEEMIPLDSAKESLGTQLQSMEDRMECESPEPHPLQDNGSFLWFSMMSQSMGGDNLSSLDTNEAEIEPEN
M
REKFFRSLARLLENKSNNTKIFSKAKYCQLIKEVKEAKAKAKKESVDYRRLARFDVILVQGNEKLIEAV
N
GETDKIRYYLHSEDLFDILHNTHLSIGHGGRTRMEKELQAKYKNITKEVIMLYLTLCKPCQQKNSKLKK
V
LTSKSIKEVSSRCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVAHALLDIFTIIGAP
S
VLQSDNGREFSSQVVSELSNIWPELKIVHGKSQTCQSQSSAEQTEDIRKRIFSWMQTNNSSHWTEFLWF
I
QMSQNQPYHRSMQQTPCESAFSSEAKLGLSHSQLTEELVASLHTENELDQADKELENTLRAQYEENIET
G
TDSSDIEENLSVTPKVAEKSPPESRLRFLSCVVCEKECTGVNSCISCDGNIHAICGVPSQHGTEGCGRQ
I
TCSLCYETSTMKRKHDEIQRSLPVKPSKMLKPSGTPFSPDKVGDW
MAKQASLDFFVKKRHAFSEHSSSN
K
RNVNNRSYPEEGKTKRVHASFTRKYDPSYIEFGFVAVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLY
S
KHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEV
C
LEMLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRF
E
HDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQIKELA
P
ECKTTHCFIHRESLAMKKISAELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEADHKQLLLHAEIRW
L
SRGKVLSRMFEIRNELLVFLQGKKPMWSQLFKDVNWTARLAYLSDIFSIFNDLNASMQGKNATYFSMAD
K
VEGQKQKLEAWKNRISTDCYDMFHNLTTIINEVGNDLDIAHLRKVISEHLTNLLECFEFYFPSKEDPRI
G
NLWIQNPFLSSKDNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAKNDYPELAEIALKLLLLF
P
STYLCETGFSTLSVIKTKHRNSLNIHYPLRVALSSIQPRLDKLTSKKQAHLSH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser