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Report for CCDS35879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35879.1 Public Mus musculus 10 Calhm5 23 108 98 CCDS HistoryNCBI Gene:103511Re-query CCDS DB by CCDS ID:35879.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069125.7 ENSMUSP00000064462.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069125.7Link to Ensembl Protein Viewer:ENSMUSP00000064462.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069125Re-query CCDS DB by Protein ID:ENSMUSP00000064462
Original member Current member NCBI NM_178908.3 NP_849239.2 Accepted alive Link to Nucleotide Sequence:NM_178908.3Link to Protein Sequence:NP_849239.2Re-query CCDS DB by Nucleotide ID:NM_178908Re-query CCDS DB by Protein ID:NP_849239Link to BLAST:NP_849239.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849239.2 309 Q8R100 309 100% 0 0

Chromosomal Locations for CCDS 35879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 34092126 34092515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34095898 34096437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGATGCCTTTCAGAGCATCTTAAAATTCTTTCTTAACCAAAAAACTGCTATTGGCTACAGCTTCATGG
CTTTGCTCACCGTGGGTAGCGAACGTCTCTTCTCGCTGGTGGCATTTAAGTGCCCCTGCAGCGTTGAGAA
TACTGCCTATGGGCTGGTTTTTCTCTTCGCCCCTGCCTGGGTGTTACTGATCCTTGGCTTCTTTCTGAAT
AACAAGGCATGGAGACTCTTCACTGGCTGCTGTATGAACCCAAAAAAAATATTTCCCAGGAGACGCTGCT
GCCGCTTCTTCTACGTCCTGGGCCATATCATACTGAGTTCACTGGTGGCTCCGGTGATGTGGCTCTCTGT
GGCTTTGCTTAATGGGACGTTTTATGAATGTGCTATGAGCGGGACAAGAAGCACAAGGCTCCTGGAGATG
ATTTGCAAGGGCAAGCCCAAAGAGTGCTGGGAAGAACTGCACAAAGTCTCCTGTGGTAAAAGTAGCATGG
CCGCTATGGAGAGTGAAGAAGTGAGGCTATCCCTGCAGGCCCAGTCTCAGATCCTAGGATGGTGCCTGAT
TTGTTCGGCGTCCTTCCTCTCCCTGCTGACCACTTGTTATGCACGCTGCAGATCTAAAGTCAGCTATCTG
CAGCTGAGTTTTTGGAAGACATATGCACAAAGGGAGAAGGAGCAACTGGAAAACAAACTCCTGGAATGTG
CTAACAAGTTAAGTGAGAGGAACCTCAAATGCTTTTTTGAAAACAAGAAGCCAGATCCCTTTCCCATGCC
CTCATTTGGTGCCTGGGAGGCTGCATCCGAGCTACACTCCTTCCATCAAGACCGTGAGCACTACAGCACC
CTCCACAAAGTGGTAGATGATGGTATGGAACAAACCCCGCAAGAGGAAGAAACAACAATGATCCTTGTGG
GTACTGCCCAGAGTTTGTGA

Translation (309 aa):
MDAFQSILKFFLNQKTAIGYSFMALLTVGSERLFSLVAFKCPCSVENTAYGLVFLFAPAWVLLILGFFLN
NKAWRLFTGCCMNPKKIFPRRRCCRFFYVLGHIILSSLVAPVMWLSVALLNGTFYECAMSGTRSTRLLEM
ICKGKPKECWEELHKVSCGKSSMAAMESEEVRLSLQAQSQILGWCLICSASFLSLLTTCYARCRSKVSYL
QLSFWKTYAQREKEQLENKLLECANKLSERNLKCFFENKKPDPFPMPSFGAWEAASELHSFHQDREHYST
LHKVVDDGMEQTPQEEETTMILVGTAQSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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