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Report for CCDS45552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45552.1 Public Homo sapiens 16 CHMP1A 24 110 108 CCDS HistoryNCBI Gene:5119Re-query CCDS DB by CCDS ID:45552.1Re-query CCDS DB by GeneID:5119See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397901.8 ENSP00000380998.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397901.8Link to Ensembl Protein Viewer:ENSP00000380998.3Re-query CCDS DB by Nucleotide ID:ENST00000397901Re-query CCDS DB by Protein ID:ENSP00000380998
Original member Current member NCBI NM_002768.5 NP_002759.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002768.5Link to Protein Sequence:NP_002759.2Re-query CCDS DB by Nucleotide ID:NM_002768Re-query CCDS DB by Protein ID:NP_002759Link to BLAST:NP_002759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002759.2 196 Q9HD42-1 196 100% 0 0

Chromosomal Locations for CCDS 45552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89646066 89646087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89646527 89646714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89647203 89647331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89649351 89649497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89651569 89651646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89653904 89653923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89657582 89657588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGACGATACCCTGTTCCAGTTGAAGTTCACGGCGAAGCAGCTGGAGAAGCTGGCCAAGAAGGCGGAGA
AGGACTCCAAGGCGGAGCAGGCCAAAGTGAAGAAGGCCCTTCTGCAGAAAAATGTAGAGTGTGCCCGTGT
GTATGCCGAGAACGCCATCCGCAAGAAGAACGAAGGTGTGAACTGGCTTCGGATGGCGTCCCGCGTAGAC
GCAGTGGCCTCCAAGGTGCAGACAGCTGTGACTATGAAGGGGGTGACCAAGAATATGGCCCAGGTGACCA
AAGCCCTGGACAAGGCCCTGAGCACCATGGACCTGCAGAAGGTCTCCTCAGTGATGGACAGGTTCGAGCA
GCAGGTGCAGAACCTGGACGTCCATACATCGGTGATGGAGGACTCCATGAGCTCGGCCACCACCCTGACC
ACGCCGCAGGAGCAGGTGGACAGCCTCATCATGCAGATCGCCGAGGAGAATGGCCTGGAGGTGCTGGACC
AGCTCAGCCAGCTGCCCGAGGGCGCCTCTGCCGTGGGCGAGAGCTCTGTGCGCAGCCAGGAGGACCAGCT
GTCACGGAGGTTGGCCGCCTTGAGGAACTAG

Translation (196 aa):
MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVD
AVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLT
TPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALRN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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