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Report for CCDS8966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8966.1 Public Homo sapiens 12 RXYLT1 24 110 108 CCDS HistoryNCBI Gene:10329Re-query CCDS DB by CCDS ID:8966.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261234.11 ENSP00000261234.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261234.11Link to Ensembl Protein Viewer:ENSP00000261234.6Re-query CCDS DB by Nucleotide ID:ENST00000261234Re-query CCDS DB by Protein ID:ENSP00000261234
Original member Current member NCBI NM_014254.3 NP_055069.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014254.3Link to Protein Sequence:NP_055069.1Re-query CCDS DB by Nucleotide ID:NM_014254Re-query CCDS DB by Protein ID:NP_055069Link to BLAST:NP_055069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055069.1 443 Q9Y2B1 443 100% 0 0

Chromosomal Locations for CCDS 8966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 63779961 63780129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 63781019 63781174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 63784970 63785072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 63802091 63802405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 63805234 63805404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 63808675 63809092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCGGCTGACGCGGAAGCGGCTCTGCTCGTTTCTTATCGCCCTGTACTGCCTATTCTCCCTCTACGCTG
CCTACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGGGTCCCCGCGGGGCCTCAGGAAGGGGGC
GGCCCCCGCGCGGGAGAGACGCGGCCGAGAACAGTCCACTTTGGAAAGTGAAGAATGGAATCCTTGGGAA
GGAGATGAAAAAAATGAGCAACAACACAGATTTAAAACTAGCCTTCAAATATTAGATAAATCCACGAAAG
GAAAAACAGATCTCAGTGTACAAATCTGGGGCAAAGCTGCCATTGGCTTGTATCTCTGGGAGCATATTTT
TGAAGGCTTACTTGATCCCAGCGATGTGACTGCTCAATGGAGAGAAGGAAAGTCAATCGTAGGAAGAACA
CAGTACAGCTTCATCACTGGTCCAGCTGTAATACCAGGGTACTTCTCCGTTGATGTGAATAATGTGGTAC
TCATTTTAAATGGAAGAGAAAAAGCAAAGATCTTTTATGCCACCCAGTGGTTACTTTATGCACAAAATTT
AGTGCAAATTCAAAAACTCCAGCATCTTGCTGTTGTTTTGCTCGGAAATGAACATTGTGATAATGAGTGG
ATAAACCCATTCCTCAAAAGAAATGGAGGCTTCGTGGAGCTGCTTTTCATAATATATGACAGCCCCTGGA
TTAATGACGTGGATGTTTTTCAGTGGCCTTTAGGAGTAGCAACATACAGGAATTTTCCTGTGGTGGAGGC
AAGTTGGTCAATGCTGCATGATGAGAGGCCATATTTATGTAATTTCTTAGGAACGATTTATGAAAATTCA
TCCAGACAGGCACTAATGAACATTTTGAAAAAAGATGGGAACGATAAGCTTTGTTGGGTTTCAGCAAGAG
AACACTGGCAGCCTCAGGAAACAAATGAAAGTCTTAAGAATTACCAAGATGCCTTGCTTCAGAGTGATCT
CACATTGTGCCCGGTCGGAGTAAACACAGAATGCTATCGAATCTATGAGGCTTGCTCCTATGGCTCCATT
CCTGTGGTGGAAGACGTGATGACAGCTGGCAACTGTGGGAATACATCTGTGCACCACGGTGCTCCTCTGC
AGTTACTCAAGTCCATGGGTGCTCCCTTTATCTTTATCAAGAACTGGAAGGAACTCCCTGCTGTTTTAGA
AAAAGAGAAAACTATAATTTTACAAGAAAAAATTGAAAGAAGAAAAATGTTACTTCAGTGGTATCAGCAC
TTCAAGACAGAGCTTAAAATGAAATTTACTAATATTTTAGAAAGCTCATTTTTAATGAATAATAAAAGTT
AA

Translation (443 aa):
MRLTRKRLCSFLIALYCLFSLYAAYHVFFGRRRQAPAGSPRGLRKGAAPARERRGREQSTLESEEWNPWE
GDEKNEQQHRFKTSLQILDKSTKGKTDLSVQIWGKAAIGLYLWEHIFEGLLDPSDVTAQWREGKSIVGRT
QYSFITGPAVIPGYFSVDVNNVVLILNGREKAKIFYATQWLLYAQNLVQIQKLQHLAVVLLGNEHCDNEW
INPFLKRNGGFVELLFIIYDSPWINDVDVFQWPLGVATYRNFPVVEASWSMLHDERPYLCNFLGTIYENS
SRQALMNILKKDGNDKLCWVSAREHWQPQETNESLKNYQDALLQSDLTLCPVGVNTECYRIYEACSYGSI
PVVEDVMTAGNCGNTSVHHGAPLQLLKSMGAPFIFIKNWKELPAVLEKEKTIILQEKIERRKMLLQWYQH
FKTELKMKFTNILESSFLMNNKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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