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Report for CCDS3090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3090.1 Public Homo sapiens 3 STAG1 24 110 108 CCDS HistoryNCBI Gene:10274Re-query CCDS DB by CCDS ID:3090.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383202.7 ENSP00000372689.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383202.7Link to Ensembl Protein Viewer:ENSP00000372689.2Re-query CCDS DB by Nucleotide ID:ENST00000383202Re-query CCDS DB by Protein ID:ENSP00000372689
Original member Current member NCBI NM_005862.3 NP_005853.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005862.3Link to Protein Sequence:NP_005853.2Re-query CCDS DB by Nucleotide ID:NM_005862Re-query CCDS DB by Protein ID:NP_005853Link to BLAST:NP_005853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005853.2 1258 Q8WVM7-1 1258 100% 0 0

Chromosomal Locations for CCDS 3090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 136338254 136338277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136338370 136338450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136340491 136340605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136341441 136341551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136343832 136344006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136349158 136349363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136357720 136357848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136359148 136359296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136363366 136363467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136366943 136367082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136369108 136369282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136377660 136377752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136398749 136398829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136417885 136417972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136421093 136421163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136422410 136422613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136422768 136422857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136422952 136423044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136433556 136433659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136443287 136443404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136452033 136452147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136464881 136464988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136472413 136472492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136473539 136473637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136477289 136477412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136500223 136500296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136502628 136502779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136521213 136521417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136542119 136542195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136568765 136568861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136604309 136604473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136623146 136623248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136630870 136630898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3777 nt):
ATGATTACTTCAGAATTACCAGTGTTACAGGATTCAACTAATGAAACTACTGCCCATTCCGATGCTGGCA
GCGAGCTTGAAGAAACAGAGGTCAAAGGAAAAAGAAAAAGGGGTCGTCCTGGCCGGCCTCCATCTACAAA
TAAGAAACCTCGAAAATCTCCAGGTGAGAAGAGCAGAATTGAAGCTGGAATTAGAGGAGCAGGCCGTGGA
AGAGCTAATGGACACCCTCAACAGAATGGGGAAGGGGAGCCTGTCACATTATTTGAGGTGGTGAAACTGG
GGAAAAGTGCAATGCAGTCCGTGGTGGATGACTGGATTGAATCATATAAACAAGACAGGGACATCGCACT
TCTGGATTTAATCAACTTTTTTATCCAGTGTTCAGGATGTCGAGGTACTGTGAGAATAGAGATGTTTCGA
AATATGCAGAATGCAGAAATCATCAGAAAAATGACTGAAGAATTTGATGAGGACAGTGGTGATTATCCTC
TTACCATGCCTGGACCTCAGTGGAAAAAATTTCGTTCAAACTTTTGTGAATTTATTGGAGTCCTGATTCG
ACAGTGTCAGTATAGCATAATTTATGATGAGTATATGATGGACACAGTAATCTCCCTTTTGACGGGTTTG
TCAGACTCCCAGGTCAGAGCTTTTAGGCATACAAGTACCCTGGCTGCCATGAAGCTCATGACTGCTCTGG
TGAATGTTGCCTTAAACCTCAGTATTCATCAGGATAATACCCAGAGACAATATGAAGCCGAGAGAAATAA
AATGATTGGGAAGAGAGCCAATGAAAGGTTGGAGTTACTACTTCAGAAACGCAAAGAGCTGCAAGAAAAT
CAGGATGAAATCGAAAATATGATGAACTCTATTTTTAAGGGTATATTTGTTCATAGATACCGTGATGCTA
TTGCTGAGATTAGAGCCATTTGTATTGAAGAAATTGGAGTATGGATGAAAATGTATAGTGATGCCTTCCT
AAATGACAGTTACCTAAAATATGTTGGCTGGACTCTTCATGACAGGCAAGGGGAAGTCAGGCTGAAGTGT
TTGAAAGCTCTGCAGAGTCTATATACCAATAGAGAATTATTCCCCAAATTGGAACTATTCACTAACCGAT
TCAAGGATCGCATTGTATCAATGACACTTGATAAAGAATATGATGTTGCTGTGGAAGCTATTCGATTGGT
TACTCTGATACTTCATGGAAGTGAAGAAGCTCTTTCCAATGAAGACTGTGAAAATGTTTACCACTTGGTG
TACTCGGCACATCGCCCTGTTGCTGTGGCAGCTGGAGAGTTCCTTCACAAAAAGCTATTTAGCAGACATG
ACCCACAAGCAGAAGAAGCATTAGCAAAGAGGAGGGGAAGAAACAGCCCGAATGGAAACCTCATTAGGAT
GCTGGTTCTTTTCTTTCTTGAAAGTGAGTTACATGAACATGCAGCCTACTTGGTGGACAGTTTATGGGAG
AGCTCTCAAGAACTGTTGAAAGACTGGGAATGTATGACAGAGTTGCTATTAGAAGAACCTGTTCAAGGAG
AGGAAGCAATGTCTGATCGTCAAGAGAGTGCTCTTATAGAGCTAATGGTTTGTACAATTCGTCAAGCTGC
TGAGGCACATCCTCCAGTGGGAAGGGGTACCGGCAAGAGAGTGCTAACTGCCAAAGAAAGGAAAACTCAA
ATTGATGATAGAAACAAATTGACTGAACATTTTATTATTACACTTCCTATGTTACTGTCAAAGTATTCTG
CAGATGCAGAGAAGGTAGCAAACTTGCTACAAATCCCACAGTATTTTGATTTAGAAATCTACAGCACAGG
TAGAATGGAAAAGCATCTGGATGCTTTATTAAAACAGATTAAGTTTGTTGTGGAGAAACACGTAGAATCA
GATGTTCTAGAAGCCTGCAGTAAAACCTATAGTATCTTATGCAGTGAAGAATATACCATCCAGAACAGAG
TTGACATAGCTCGAAGCCAGCTGATTGATGAGTTTGTAGATCGATTCAATCATTCTGTGGAAGACCTATT
GCAAGAGGGAGAAGAAGCTGATGATGATGACATTTACAATGTTCTTTCTACATTAAAGCGGTTAACTTCT
TTTCACAATGCACATGATCTCACAAAATGGGATCTCTTTGGTAATTGCTACAGATTATTGAAGACTGGAA
TTGAACATGGAGCCATGCCAGAACAGATAGTCGTGCAAGCACTGCAGTGTTCCCATTATTCGATTCTTTG
GCAGTTGGTGAAAATTACTGATGGCTCTCCTTCCAAAGAGGATTTGTTGGTATTGAGGAAAACGGTGAAA
TCCTTTTTGGCTGTTTGCCAGCAGTGCCTGTCTAATGTTAATACTCCAGTGAAAGAACAGGCTTTCATGT
TACTCTGTGATCTTCTGATGATTTTCAGCCACCAATTAATGACAGGTGGCAGAGAGGGCCTTCAGCCTTT
GGTGTTCAATCCAGATACTGGACTCCAATCTGAACTCCTCAGTTTTGTGATGGATCACGTTTTTATTGAC
CAAGACGAGGAGAACCAGAGCATGGAGGGTGATGAAGAAGATGAAGCTAATAAAATTGAGGCCTTACATA
AAAGAAGGAATCTACTTGCTGCTTTCAGCAAACTTATCATTTATGACATTGTTGACATGCATGCAGCTGC
AGACATCTTCAAACACTACATGAAGTATTACAATGACTATGGTGATATTATTAAGGAAACACTGAGTAAA
ACCAGGCAGATTGATAAAATTCAGTGTGCCAAGACTCTCATTCTCAGTTTGCAACAGTTATTTAATGAAC
TTGTTCAAGAGCAAGGTCCCAACCTAGATAGGACATCTGCCCATGTCAGTGGCATTAAAGAACTGGCACG
TCGCTTTGCCCTTACATTTGGATTGGACCAGATTAAGACACGAGAAGCAGTTGCCACACTTCACAAGGAT
GGCATAGAGTTTGCATTTAAATACCAAAATCAGAAAGGACAAGAGTATCCACCTCCTAATCTGGCTTTTC
TTGAAGTACTAAGTGAATTTTCTTCTAAACTTCTTCGACAGGACAAAAAGACAGTTCATTCATACCTAGA
GAAATTCCTTACCGAGCAGATGATGGAAAGGAGGGAGGATGTATGGCTTCCACTCATCTCCTATAGAAAT
TCATTAGTCACTGGGGGTGAAGATGATAGAATGTCTGTGAACAGTGGAAGTAGCAGCAGCAAAACCTCAT
CAGTAAGGAATAAGAAAGGACGACCTCCACTTCATAAAAAACGAGTAGAAGATGAGAGTCTGGATAACAC
ATGGCTAAACAGGACTGACACCATGATTCAGACTCCTGGCCCCCTGCCAGCACCACAACTCACATCCACT
GTACTGCGGGAGAACAGTCGGCCCATGGGAGACCAGATTCAAGAACCTGAGTCTGAACATGGTTCTGAAC
CAGACTTTTTACACAATCCTCAGATGCAGATCTCTTGGTTAGGCCAGCCGAAGTTAGAAGACTTAAATCG
GAAGGACAGAACAGGAATGAACTACATGAAAGTGAGAACTGGAGTGAGGCATGCTGTTCGGGGTCTAATG
GAGGAAGATGCTGAGCCCATCTTTGAAGATGTGATGATGTCATCCCGAAGCCAGTTAGAAGATATGAATG
AAGAATTTGAGGACACCATGGTTATTGATCTGCCTCCATCAAGAAATCGGCGAGAGAGAGCTGAGCTAAG
GCCAGACTTCTTTGACTCTGCAGCTATCATAGAAGATGATTCAGGATTTGGAATGCCTATGTTCTGA

Translation (1258 aa):
MITSELPVLQDSTNETTAHSDAGSELEETEVKGKRKRGRPGRPPSTNKKPRKSPGEKSRIEAGIRGAGRG
RANGHPQQNGEGEPVTLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQCSGCRGTVRIEMFR
NMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGL
SDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQEN
QDEIENMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKC
LKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLV
YSAHRPVAVAAGEFLHKKLFSRHDPQAEEALAKRRGRNSPNGNLIRMLVLFFLESELHEHAAYLVDSLWE
SSQELLKDWECMTELLLEEPVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQ
IDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVES
DVLEACSKTYSILCSEEYTIQNRVDIARSQLIDEFVDRFNHSVEDLLQEGEEADDDDIYNVLSTLKRLTS
FHNAHDLTKWDLFGNCYRLLKTGIEHGAMPEQIVVQALQCSHYSILWQLVKITDGSPSKEDLLVLRKTVK
SFLAVCQQCLSNVNTPVKEQAFMLLCDLLMIFSHQLMTGGREGLQPLVFNPDTGLQSELLSFVMDHVFID
QDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDMHAAADIFKHYMKYYNDYGDIIKETLSK
TRQIDKIQCAKTLILSLQQLFNELVQEQGPNLDRTSAHVSGIKELARRFALTFGLDQIKTREAVATLHKD
GIEFAFKYQNQKGQEYPPPNLAFLEVLSEFSSKLLRQDKKTVHSYLEKFLTEQMMERREDVWLPLISYRN
SLVTGGEDDRMSVNSGSSSSKTSSVRNKKGRPPLHKKRVEDESLDNTWLNRTDTMIQTPGPLPAPQLTST
VLRENSRPMGDQIQEPESEHGSEPDFLHNPQMQISWLGQPKLEDLNRKDRTGMNYMKVRTGVRHAVRGLM
EEDAEPIFEDVMMSSRSQLEDMNEEFEDTMVIDLPPSRNRRERAELRPDFFDSAAIIEDDSGFGMPMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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