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Report for CCDS1535.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
1535.2 |
Public |
Homo sapiens |
1 |
FAM177B |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:400823](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:1535.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:400823](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 1535.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000360827.6 |
ENSP00000354070.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000360827.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000354070.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000360827](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000354070](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000445590.4 |
ENSP00000414451.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000445590.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000414451.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000445590](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000414451](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001324080.2 |
NP_001311009.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001324080.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001311009.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001324080](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001311009](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001311009.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001394345.1 |
NP_001381274.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001394345.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001381274.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001394345](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001381274](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001381274.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_207468.3 |
NP_997351.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_207468.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_997351.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_207468](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_997351](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_997351.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 1535.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (477 nt): ATGGAGATTGACGGTTTCCAGCAGTTAGACCTAGAGAAGAGTGTACCTTCCAAAAAGACTACTCCTAAAA GGATTATCCATTTTGTTGACGGAGACATCATGGAAGAATATAGCACAGAGGAGGAGGAGGAAGAGGAAAA GGAGGAGCAGAGCACAAATTCAACACTTGACCCTTCTAAACTTTCCTGGGGGCCCTACCTACGATTTTGG GCAGGACGAATAGCAAGCACCTCATTTTCTACATGTGAATTCCTTGGTGGAAGATTTGCTGTCTTCTTTG GTCTTACTCAACCCAAATATCAGTATGTGTTAAACGAGTTCTATAGGATACAAAACAAGAAAAGTGACAA CAAAAGTGAAAGGAGAGGATCAAAGGCCCAGGCAGCTGAGGTTCCTAATGAAAAGTGTCACTTGGAGGCT GGGGTCCAAGAGTATGGAACCATACAACAGGATGTGACAGAGGCCATTCCTCAGTGA
Translation (158 aa): MEIDGFQQLDLEKSVPSKKTTPKRIIHFVDGDIMEEYSTEEEEEEEKEEQSTNSTLDPSKLSWGPYLRFW AGRIASTSFSTCEFLGGRFAVFFGLTQPKYQYVLNEFYRIQNKKSDNKSERRGSKAQAAEVPNEKCHLEA GVQEYGTIQQDVTEAIPQ
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