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Report for CCDS83141.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
83141.1 |
Public |
Homo sapiens |
6 |
SOD2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:6648](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:83141.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:6648](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85
Review status: Reviewed (by RefSeq and Havana)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 83141.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000546087.5 |
ENSP00000442920.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000546087.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000442920.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000546087](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000442920](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322817.2 |
NP_001309746.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322817.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309746.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322817](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309746](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309746.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322819.2 |
NP_001309748.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322819.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309748.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322819](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309748](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309748.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322820.2 |
NP_001309749.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322820.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309749.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322820](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309749](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309749.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 83141.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (531 nt): ATGCAGCTGCACCACAGCAAGCACCACGCGGCCTACGTGAACAACCTGAACGTCACCGAGGAGAAGTACC AGGAGGCGTTGGCCAAGGGAGATGTTACAGCCCAGATAGCTCTTCAGCCTGCACTGAAGTTCAATGGTGG TGGTCATATCAATCATAGCATTTTCTGGACAAACCTCAGCCCTAACGGTGGTGGAGAACCCAAAGGGGAG TTGCTGGAAGCCATCAAACGTGACTTTGGTTCCTTTGACAAGTTTAAGGAGAAGCTGACGGCTGCATCTG TTGGTGTCCAAGGCTCAGGTTGGGGTTGGCTTGGTTTCAATAAGGAACGGGGACACTTACAAATTGCTGC TTGTCCAAATCAGGATCCACTGCAAGGAACAACAGGCCTTATTCCACTGCTGGGGATTGATGTGTGGGAG CACGCTTACTACCTTCAGTATAAAAATGTCAGGCCTGATTATCTAAAAGCTATTTGGAATGTAATCAACT GGGAGAATGTAACTGAAAGATACATGGCTTGCAAAAAGTAA
Translation (176 aa): MQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGE LLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWE HAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
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