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Report for CCDS40178.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40178.2 Public Mus musculus 7 Nlrp6 23 108 98 CCDS HistoryNCBI Gene:101613Re-query CCDS DB by CCDS ID:40178.2See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 40178.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40178.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183845.7 ENSMUSP00000139357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183845.7Link to Ensembl Protein Viewer:ENSMUSP00000139357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183845Re-query CCDS DB by Protein ID:ENSMUSP00000139357
Original member NCBI NM_133946.2 NP_598707.2 Updated not alive Link to Nucleotide Sequence:NM_133946.2Link to Protein Sequence:NP_598707.2Re-query CCDS DB by Nucleotide ID:NM_133946Re-query CCDS DB by Protein ID:NP_598707
Current member NCBI NM_133946.3 NP_598707.2 Accepted alive Link to Nucleotide Sequence:NM_133946.3Link to Protein Sequence:NP_598707.2Re-query CCDS DB by Nucleotide ID:NM_133946Re-query CCDS DB by Protein ID:NP_598707Link to BLAST:NP_598707.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598707.2 869 Q91WS2-1 869 100% 0 0

Chromosomal Locations for CCDS 40178.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140921058 140921086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140921641 140921912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140922158 140922193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140922410 140924156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140925116 140925208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140926415 140926585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140926662 140926829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140927429 140927522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2610 nt):
ATGGATGCCGCTGGAGCCTCCTGCTCCAGCGTGGATGCAGTGGCAAGGGAGCTGCTTATGGCTACACTGG
AGGAGCTGAGCCAGGAGCAGCTGAAGCGCTTCCGCCACAAGCTAAGGGATGCGCCCCTGGATGGCCGCAG
CATCCCGTGGGGGCGACTGGAGCGCTCAGACGCTGTGGACCTTGTCGACAAGCTCATTGAGTTCTATGAG
CCAGTGCCAGCTGTAGAAATGACCCGGCAGGTCCTGAAGAGGTCGGATATTCGAGATGTGGCCTCGCGAC
TTAAGCAACAGCAGCTACAGAAGCTCGGCCCCACCTCGGTGCTTCTCTCCGTGTCAGCGTTCAAGAAGAA
GTACCGCGAGCACGTGCTACGACAGCATGCTAAGGTGAAGGAGAGGAATGCTCGCTCTGTGAAGATCAAC
AAGCGCTTCACCAAGCTGCTCATCGCTCCGGGGACCGGCGCTGTGGAGGACGAGCTGCTGGGGCCGTTGG
GGGAGCCGGAGCCCGAACGCGCTCGGCGCTCGGACACGCACACTTTTAATCGGCTCTTCCGGGGAAATGA
TGAAGAGAGCTCGCAGCCGCTGACCGTGGTGCTGCAGGGCCCGGCAGGCATCGGCAAAACCATGGCCGCC
AAGAAAATCCTCTATGACTGGGCAGCAGGTAAGCTATACCACAGCCAGGTGGACTTTGCCTTCTTCATGC
CGTGCGGCGAGCTGCTGGAGCGGCCGGGAAAGCGCAGCTTGGCGGACCTGGTGCTGGACCAGTGCCCGGA
CCGCGCTTGGCCAGTGAAGCGGATACTGGCGCAACCCAATCGCCTACTGTTCATCCTGGACGGTGCAGAC
GAGCTGCCTACTTTACCATCCTCAGAGGCCACTCCCTGCAAAGACCCTTTGGAGGCTACAAGTGGCTTGA
GAGTGCTGAGCGGGCTGCTGAGCCAGGAGCTGTTACCAGGAGCTCGCTTGCTAGTGACTACACGCCATGC
CGCTACAGGGAGGCTGCAGGGCAGATTGTGCTCGCCACAGTGCGCAGAAATACGCGGCTTCTCAGACAAA
GACAAAAAAAAGTATTTCTTCAAGTTCTTCCGGGACGAGAGGAAGGCAGAGCGCGCTTACCGCTTCGTGA
AAGAGAACGAGACGCTGTTTGCACTGTGCTTTGTGCCCTTCGTGTGCTGGATCGTGTGCACAGTGCTGCA
GCAGCAGCTAGAGCTGGGCCGGGATCTCTCTCGTACCTCCAAGACCACTACTTCTGTGTACCTGCTCTTC
ATCACCAGCATGCTGAAGTCTGCAGGCACCAATGGACCCCGGGTTCAGGGAGAGCTGAGAACGCTGTGTC
GCCTGGCCAGGGAGGGCATCCTGGATCATCATAAAGCACAATTCTCAGAAGAGGACCTGGAGAAATTGAA
GCTTCGGGGTTCCCAAGTTCAGACAATATTTCTCAACAAGAAAGAGATACCAGGAGTGCTAAAAACTGAG
GTCACCTACCAGTTCATTGACCAGAGCTTCCAGGAGTTCTTGGCTGCATTGTCATACCTACTAGAAGCTG
AGCGAACTCCGGGGACGCCCGCAGGCGGTGTGCAGAAGCTCCTGAACTCTGACGCGGAGCTACGTGGTCA
TCTTGCACTGACCACCCGATTCCTCTTTGGCCTGCTAAATACAGAGGGGCTTCGTGACATTGGAAACCAT
TTTGGCTGTGTGGTGCCAGATCATGTGAAAAAGGACACCCTGCGGTGGGTACAAGGACAGAGCCACCCCA
AGGGGCCACCAGTAGGGGCAAAAAAGACTGCTGAGCTGGAGGACATCGAGGACGCAGAGGAGGAGGAGGA
GGAAGAGGAGGACCTCAATTTTGGACTGGAGCTGCTGTACTGCCTGTATGAGACACAGGAGGAGGATTTT
GTTCGACAGGCTCTCAGCAGCCTTCCAGAGATAGTACTGGAGCGAGTCAGGTTGACCCGCATGGACCTTG
AAGTTCTGAATTACTGCGTGCAGTGCTGCCCAGATGGCCAGGCTCTGAGACTGGTGAGCTGTGGGCTGGT
GGCGGCAAAGGAGAAGAAGAAGAAGAAGAAGAGCCTGGTGAAGCGGCTGAAGGGCTCTCAAAGCACCAAG
AAACAACCCCCAGTCTCCTTGCTGCGTCCACTCTGTGAGACAATGACTACCCCGAAATGTCATCTGAGTG
TTCTGATCTTGTCACACTGCAGACTCCCTGATGCAGTTTGCCGAGACCTTTCCGAGGCCCTGAAGGTAGC
TCCTGCCCTAAGGGAGTTGGGCCTCCTCCAGAGCCGGCTCACCAACACAGGCCTGCGTTTACTGTGCGAA
GGCCTGGCTTGGCCCAAGTGCCAGGTGAAGACACTCAGGATGCAGCTGCCTGACCTCCAAGAGGTGATCA
ATTACTTGGTCATCGTGCTCCAGCAGAGCCCAGTCCTGACCACTCTGGACCTCAGTGGCTGTCAGCTGCC
TGGCGTCATTGTGGAACCTCTGTGTGCAGCCCTGAAGCACCCTAAATGCTCCCTAAAGACCCTCAGTCTG
ACCTCTGTGGAGCTGAGTGAGAACTCACTGAGGGATCTTCAAGCTGTGAAGACATCAAAGCCAGATCTGT
CCATCATATATTCAAAATAA

Translation (869 aa):
MDAAGASCSSVDAVARELLMATLEELSQEQLKRFRHKLRDAPLDGRSIPWGRLERSDAVDLVDKLIEFYE
PVPAVEMTRQVLKRSDIRDVASRLKQQQLQKLGPTSVLLSVSAFKKKYREHVLRQHAKVKERNARSVKIN
KRFTKLLIAPGTGAVEDELLGPLGEPEPERARRSDTHTFNRLFRGNDEESSQPLTVVLQGPAGIGKTMAA
KKILYDWAAGKLYHSQVDFAFFMPCGELLERPGKRSLADLVLDQCPDRAWPVKRILAQPNRLLFILDGAD
ELPTLPSSEATPCKDPLEATSGLRVLSGLLSQELLPGARLLVTTRHAATGRLQGRLCSPQCAEIRGFSDK
DKKKYFFKFFRDERKAERAYRFVKENETLFALCFVPFVCWIVCTVLQQQLELGRDLSRTSKTTTSVYLLF
ITSMLKSAGTNGPRVQGELRTLCRLAREGILDHHKAQFSEEDLEKLKLRGSQVQTIFLNKKEIPGVLKTE
VTYQFIDQSFQEFLAALSYLLEAERTPGTPAGGVQKLLNSDAELRGHLALTTRFLFGLLNTEGLRDIGNH
FGCVVPDHVKKDTLRWVQGQSHPKGPPVGAKKTAELEDIEDAEEEEEEEEDLNFGLELLYCLYETQEEDF
VRQALSSLPEIVLERVRLTRMDLEVLNYCVQCCPDGQALRLVSCGLVAAKEKKKKKKSLVKRLKGSQSTK
KQPPVSLLRPLCETMTTPKCHLSVLILSHCRLPDAVCRDLSEALKVAPALRELGLLQSRLTNTGLRLLCE
GLAWPKCQVKTLRMQLPDLQEVINYLVIVLQQSPVLTTLDLSGCQLPGVIVEPLCAALKHPKCSLKTLSL
TSVELSENSLRDLQAVKTSKPDLSIIYSK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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