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Report for CCDS61575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61575.1 Public Homo sapiens 15 GOLGA8R 24 110 108 CCDS HistoryNCBI Gene:101059918Re-query CCDS DB by CCDS ID:61575.1See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 61575.1
The exon combination of this CCDS representation is inferred. It is supported by partial transcript alignments and by paralogous golgin A8 family alignments.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 61575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327271.11 ENSP00000323217.10 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327271.11Link to Ensembl Protein Viewer:ENSP00000323217.10Re-query CCDS DB by Nucleotide ID:ENST00000327271Re-query CCDS DB by Protein ID:ENSP00000323217
Original member Current member NCBI NM_001282484.1 NP_001269413.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282484.1Link to Protein Sequence:NP_001269413.1Re-query CCDS DB by Nucleotide ID:NM_001282484Re-query CCDS DB by Protein ID:NP_001269413Link to BLAST:NP_001269413.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269413.1 631 I6L899-1 631 100% 0 0

Chromosomal Locations for CCDS 61575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 30403740 30403915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30404001 30404156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30404252 30404349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30404432 30404532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30405107 30405198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30405630 30405705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30406951 30407019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30407275 30407531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30407908 30407992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30408188 30408295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30408402 30408488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30409541 30409650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30409746 30409830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30409919 30409966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30410229 30410267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30411119 30411199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30411381 30411440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30412329 30412448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30414115 30414162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGCAGAAGAAACTCAACACAACAAATTGGCTGCAGCCAAGAAAAAGTTAAAAGAATATTGGCAGAAAA
ACAGACCTAGAGTTCCAGCAGGAGTGAACAGGAACAGGAAAACAAATGGCAGTATCCCTGAGACAGCCAC
TTCCGGTGGTTGCCAGCCACCTGGGGATTCAGCAACAGGTTTCCACAGGGAAGGCCCTACATCATCTGCT
ACCCTGAAAGATCTGGAGAGCCCGTGCCAAGAACGAGCAGTAGTCCTGGATTCAACGTCCGTAAAAATCA
GTCGACTGAAGAACACCATCAAATCTTTGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGA
AAAGAAAGCAAACAACGAGAGACAGAAAGCCGAAAGGGTGCTAGAGGTTCAAATCCAGACATTGATCATA
CAGAAAGAGGAACTAAATACGGACCTGTACCACATGGAACGTTCTCTCAGATACTTTGAAGAAGAGTCCA
AGGACCTGGCTGTCCGCCTGCAACATTCATTGCAGTGTAAAGGAGAGTTAGAGAGGGCTCTGTCTGCTGT
CATCGCCACAGAGAAGAAGAAGGCAAACCAGTTGTCCAGCTGCAGCAAAGCACATACAGAGTGGGAGTTA
GAGCAGTCCCTACAGGACCAGGCACTGCTGAAAGCGCAGCTGACACAGTTGAAGGAGTCATTTCAACAAC
TCCAATTAGAAAGAGATGAGTGTGCTGAACATATAGAAGGAGAGAGGGCCCGGTGGCATCAGAGGATGAG
TAAAATGTCGCAGGAGATTTGCACATTAAAGAAAGAGAAGCAGGATATGCGTTGGGTAGAGCAGCTGGAG
TGGAGCTTGTCCAAACTCAAAAACCAGACGGCTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCTCTG
AGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGTCCCAGGTCAAAAA
CAATCAGCACATAAGTCTCCTGAACCGGCGACAAGAAGAGAGGATTCGGGAACAGGAAGAGAGGCTTCGG
AAGCAGGAGGAGAGGCTTCAGGAGCAGCACGAGAAGCTTCGGCAGCTGGCCAAGCCACAGAGCGTCTTCG
AGGAGCTGAACAATGAGAACAAGAGCACACTGCAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAAGCT
TGGCGAGGAGCACCTGGAAGTGGCCAGCCAGCAGAACCAGCAGCTAACGGCCCAGCTGAGCCTCATGGCT
CTCCCTGGGGAAGGACACGGAGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCAGCCCATGCCGA
GTGTCCCAGAGGACCCGGAGAGCAGGGAGGCCATGAGCAGCTTTATGGACCACCTGAAGGAGAAGGCAGA
CCTGAGTGAGCTGCTGAAAAAACAAGAACTTCGCTTCATTCAATACTGGCAAGAGAGATGCCATCAGAAA
ATCCATCACCTTTTATCAGAACCAGGGGGCCGTGCCAAAGATGCAGCACTGGGAGGAGGACACCATCAGG
CTGGAGCTCAGGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGCAGATGGTATTGCGGCTTACAGCAA
CTACAACAATGGGCACAGAAAATTCCTGGCCGCTGCCCACAACTCTGCTGATGAGCCCGGTCCAGGAGCC
CCAGCCCCCCAGGAGCTTGGGGCTGCAGACAAGCATGGTGATCTTCGTGAGGTGACCCTCACCTCCTCTG
CCCAAGGAGAGGCCAGGGAGGATCCTCTCCTTGACAAGCCTACTGCACAGCCGATCGTGCAGGACCACCA
GGAGCACCCAGGCTTGGGCAGCAACTGCTGTGTGCCATTATTTTGTTGGGCTTGGCTGCCAAGAAGAAGG
AGATAA

Translation (631 aa):
MAEETQHNKLAAAKKKLKEYWQKNRPRVPAGVNRNRKTNGSIPETATSGGCQPPGDSATGFHREGPTSSA
TLKDLESPCQERAVVLDSTSVKISRLKNTIKSLKQQKKQVEHQLEEEKKANNERQKAERVLEVQIQTLII
QKEELNTDLYHMERSLRYFEEESKDLAVRLQHSLQCKGELERALSAVIATEKKKANQLSSCSKAHTEWEL
EQSLQDQALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMSQEICTLKKEKQDMRWVEQLE
WSLSKLKNQTAEPLPPEPPAVPSEVELQHLRKELERVAGELQSQVKNNQHISLLNRRQEERIREQEERLR
KQEERLQEQHEKLRQLAKPQSVFEELNNENKSTLQLEQQVKELQEKLGEEHLEVASQQNQQLTAQLSLMA
LPGEGHGGEHLDSEGEEAPQPMPSVPEDPESREAMSSFMDHLKEKADLSELLKKQELRFIQYWQERCHQK
IHHLLSEPGGRAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNSADEPGPGA
PAPQELGAADKHGDLREVTLTSSAQGEAREDPLLDKPTAQPIVQDHQEHPGLGSNCCVPLFCWAWLPRRR
R


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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