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Report for CCDS51613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51613.1 Public Mus musculus 5 Hscb 23 108 98 CCDS HistoryNCBI Gene:100900Re-query CCDS DB by CCDS ID:51613.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056937.11 ENSMUSP00000062811.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056937.11Link to Ensembl Protein Viewer:ENSMUSP00000062811.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056937Re-query CCDS DB by Protein ID:ENSMUSP00000062811
Original member NCBI NM_153571.2 NP_705799.2 Updated not alive Link to Nucleotide Sequence:NM_153571.2Link to Protein Sequence:NP_705799.2Re-query CCDS DB by Nucleotide ID:NM_153571Re-query CCDS DB by Protein ID:NP_705799
Current member NCBI NM_153571.3 NP_705799.2 Accepted alive Link to Nucleotide Sequence:NM_153571.3Link to Protein Sequence:NP_705799.2Re-query CCDS DB by Nucleotide ID:NM_153571Re-query CCDS DB by Protein ID:NP_705799Link to BLAST:NP_705799.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705799.2 234 Q8K3A0 234 99.5726% 0 1

Chromosomal Locations for CCDS 51613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110829120 110829211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110830936 110830983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110834655 110834799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110835980 110836069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110836307 110836403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110839496 110839728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGTGGGGATGCGGAGCCCGTGCCCTGCTGGGTGTGTGGGAGGTGCGGCTGGCAGGGTTCCTGGGAAGGA
GACTTTTGGGCAGCAATGCCGCCGCGGGGAAGAGCATTGCACCGCAGTGCTGGAACTGCGGTCACGCAAG
GGAAGTCGGGTGTGGGGATGAGTTCTTCTGCTCACACTGCCGCGCTCTGCAGCCTCCTGACCCCACTCGT
GACTACTTCAGCCTCATGAACTGCAACCGCTCCTTCAGGGTGGACGTTACGAAACTTCAGCACAGGTACC
AGCAACTGCAGCGGCTTGTCCACCCAGATTTCTTCAGCCAAAAGTCTCAGACTGAAAAACACTTCTCTGA
CAAGCACTCCACCCTGGTGAATGATGCCTATAAGACTCTTCAGGCTCCCCTGACCAGAGGACTATATCTT
CTAAAGCTCCAGGGAATAGAAATTCCTGAAGGGACAGATTACAAAGCAGACAGTCAGTTCCTTGTGGAAA
TCATGGAAATCAATGAAAGACTCGCAGACGCCCAAAGTGAGGCCGCCATGGAAGAGATAGAAGCCACTGT
CAGAGCTAAACAGAAAGAATTTACTGACAATATAAACAGCGCTTTTGAACAAGGTGACTTTGAAAAAGCC
AAGGAACTCCTGACAAAGATGAGATACTTTTCGAACATAGAAGAAAAGATCAAGCTAAGCAAGACTCCTC
TCTAG

Translation (234 aa):
MWGCGARALLGVWEVRLAGFLGRRLLGSNAAAGKSIAPQCWNCGHAREVGCGDEFFCSHCRALQPPDPTR
DYFSLMNCNRSFRVDVTKLQHRYQQLQRLVHPDFFSQKSQTEKHFSDKHSTLVNDAYKTLQAPLTRGLYL
LKLQGIEIPEGTDYKADSQFLVEIMEINERLADAQSEAAMEEIEATVRAKQKEFTDNINSAFEQGDFEKA
KELLTKMRYFSNIEEKIKLSKTPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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