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Report for CCDS5844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5844.1 Public Homo sapiens 7 PTN 24 110 108 CCDS HistoryNCBI Gene:5764Re-query CCDS DB by CCDS ID:5844.1Re-query CCDS DB by GeneID:5764See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5844.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348225.7 ENSP00000341170.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000348225.7Link to Ensembl Protein Viewer:ENSP00000341170.2Re-query CCDS DB by Nucleotide ID:ENST00000348225Re-query CCDS DB by Protein ID:ENSP00000341170
Original member Current member NCBI NM_001321386.2 NP_001308315.1 Accepted alive Link to Nucleotide Sequence:NM_001321386.2Link to Protein Sequence:NP_001308315.1Re-query CCDS DB by Nucleotide ID:NM_001321386Re-query CCDS DB by Protein ID:NP_001308315Link to BLAST:NP_001308315.1
Original member Current member NCBI NM_002825.7 NP_002816.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002825.7Link to Protein Sequence:NP_002816.1Re-query CCDS DB by Nucleotide ID:NM_002825Re-query CCDS DB by Protein ID:NP_002816Link to BLAST:NP_002816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308315.1 168 P21246 168 100% 0 0
NP_002816.1 168 P21246 168 100% 0 0

Chromosomal Locations for CCDS 5844.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 137228020 137228075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137251230 137251391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137253464 137253637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137254859 137254973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGCAGGCTCAACAGTACCAGCAGCAGCGTCGAAAATTTGCAGCTGCCTTCTTGGCATTCATTTTCATAC
TGGCAGCTGTGGATACTGCTGAAGCAGGGAAGAAAGAGAAACCAGAAAAAAAAGTGAAGAAGTCTGACTG
TGGAGAATGGCAGTGGAGTGTGTGTGTGCCCACCAGTGGAGACTGTGGGCTGGGCACACGGGAGGGCACT
CGGACTGGAGCTGAGTGCAAGCAAACCATGAAGACCCAGAGATGTAAGATCCCCTGCAACTGGAAGAAGC
AATTTGGCGCGGAGTGCAAATACCAGTTCCAGGCCTGGGGAGAATGTGACCTGAACACAGCCCTGAAGAC
CAGAACTGGAAGTCTGAAGCGAGCCCTGCACAATGCCGAATGCCAGAAGACTGTCACCATCTCCAAGCCC
TGTGGCAAACTGACCAAGCCCAAACCTCAAGCAGAATCTAAGAAGAAGAAAAAGGAAGGCAAGAAACAGG
AGAAGATGCTGGATTAA

Translation (168 aa):
MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSGDCGLGTREGT
RTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKP
CGKLTKPKPQAESKKKKKEGKKQEKMLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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