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Report for CCDS57104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57104.1 Public Mus musculus 17 Prr22 23 108 98 CCDS HistoryNCBI Gene:100504446Re-query CCDS DB by CCDS ID:57104.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168666.2 ENSMUSP00000127457.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168666.2Link to Ensembl Protein Viewer:ENSMUSP00000127457.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168666Re-query CCDS DB by Protein ID:ENSMUSP00000127457
Original member Current member NCBI NM_001195673.1 NP_001182602.1 Accepted alive Link to Nucleotide Sequence:NM_001195673.1Link to Protein Sequence:NP_001182602.1Re-query CCDS DB by Nucleotide ID:NM_001195673Re-query CCDS DB by Protein ID:NP_001182602Link to BLAST:NP_001182602.1

Chromosomal Locations for CCDS 57104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56770340 56770451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56770536 56770601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56771027 56772117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCAGCATCCCAAAACCCTGTATCCCCCAGCCATATCCCAGGAAGGCTTCAGCCTGCAGAGCCTGGAGG
GCCCTGAGGTGCCAGGTGGCCCAGAACCCCTTCCCACCGTAGCCAATGCTAACCTGCACTATCAGACCCC
CGGCTCGGACCAGGATGTGCTTCCAGCCCCTCCAGCAGGCTTCCAGATGGCTCCCTGCGGCTGCTTCTTC
GACCCCCGAATCTACCGCATCGAGTGGGCCACCTCCGACTTTGGCCAGTCATCCCTGTACAAAGTGGCAG
TGGCTGGGGGTCCTGCCTTGTCTGGTGGTTACTTGCTGGAGGCCCCATCCTACCTCAAGGCCCCGGGGCC
ACCACCTCTACTGTACCCCCACTACCAGCCGGCCCCCAGCGGGCCACAGTACCTCACACATTACCTTCCA
GCGGAGGAGCCTGTGCCTGAGGCTCTGGGCTTCATGCGGGACGGAGGGCCTCTCAACTTCATGGAGATGC
TCAGAGACCGCCTGGCACCTCCGCCAACCCCCAAAGAGACTACGCCATCTCCCTTGCTTATCACAGTCCC
CACGGCACACACGCTGCCACCCGGGCCCTATGGCCATCTCGGTGGCCAAGCCAGCCAGTTCCCAGGACCC
CAGGTGACCATGAGGCCCATTGAGGCTTCCAGGGAGCTGCAGAGCAGTGGTGTGGCCAGGCCAGGTCTGC
GATTCCCACCCGGGCCTGTAGAGCCCAAGGTGGCCAAGGTGGAGGACGTCACCCCAGTGGGCTCAGGGGA
GACCATGCCTGCCGAGGCGGCACGTGCGTTCTTCCTACCGGACAAGGTCCTTCTCGAAGATGCCATGAAA
CTTTTTGATTGTCTCCCTGGTGGCACTGAGCCTGAGGTGGCCTTGCACAGGGGTCCTGGCCCTGGACTGC
GGGACAGTGGTGGCGGTGGGGATGACTTCCCAACCGACATTCGCTCCCTGCACCTGCCAGATGACCTGCT
GTCCTTTGACTACAGTGTCCCCGAGATCCTAGATGCGGTGGCCAATGTGGACTACTTTTTCAGCTTCAAG
GCCCTGGATGATGAACCACCAGTGCCGCATCTCGGGGTCCCTGCCACTGACACAGTGGCCCCAGGCCTGC
GGTCCCATCAACTGGGGAAAAAACCCAGCATGCCCACCAAGAAAGGGAAGCCAGGCAGCAGACACAGGCA
GACCACAGGCCCAGCTGACACAGCTGCCGCCGCCGCTGCTGCAGGACCCAGGCTGGACCCGGGAGCCATC
CCCAATTAA

Translation (422 aa):
MQHPKTLYPPAISQEGFSLQSLEGPEVPGGPEPLPTVANANLHYQTPGSDQDVLPAPPAGFQMAPCGCFF
DPRIYRIEWATSDFGQSSLYKVAVAGGPALSGGYLLEAPSYLKAPGPPPLLYPHYQPAPSGPQYLTHYLP
AEEPVPEALGFMRDGGPLNFMEMLRDRLAPPPTPKETTPSPLLITVPTAHTLPPGPYGHLGGQASQFPGP
QVTMRPIEASRELQSSGVARPGLRFPPGPVEPKVAKVEDVTPVGSGETMPAEAARAFFLPDKVLLEDAMK
LFDCLPGGTEPEVALHRGPGPGLRDSGGGGDDFPTDIRSLHLPDDLLSFDYSVPEILDAVANVDYFFSFK
ALDDEPPVPHLGVPATDTVAPGLRSHQLGKKPSMPTKKGKPGSRHRQTTGPADTAAAAAAAGPRLDPGAI
PN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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