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Report for CCDS35077.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35077.3 Public Homo sapiens 9 CCDC180 24 110 108 CCDS HistoryNCBI Gene:100499483Re-query CCDS DB by CCDS ID:35077.3See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35077.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 35077.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529487.3 ENSP00000434727.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000529487.3Link to Ensembl Protein Viewer:ENSP00000434727.2Re-query CCDS DB by Nucleotide ID:ENST00000529487Re-query CCDS DB by Protein ID:ENSP00000434727
Original member Current member NCBI NM_020893.6 NP_065944.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020893.6Link to Protein Sequence:NP_065944.3Re-query CCDS DB by Nucleotide ID:NM_020893Re-query CCDS DB by Protein ID:NP_065944Link to BLAST:NP_065944.3

Chromosomal Locations for CCDS 35077.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97308064 97308132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97309414 97309604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97312113 97312201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97313236 97313345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97314393 97314521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97314618 97314728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97314851 97314946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97317065 97317228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97318463 97318582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97320126 97320205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97322833 97322921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97323781 97323903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97325019 97325192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97326554 97326669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97328020 97328146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97330154 97330193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97330322 97330767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97343340 97343563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97347314 97347489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97349111 97349291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97350409 97350555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97354569 97354713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97354892 97355008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97357627 97357725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97359982 97360101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97361726 97361898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97362196 97362441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97364051 97364128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97365673 97365739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97366559 97366700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97369922 97370082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97370641 97370778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97371595 97371706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97374543 97374648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97375454 97375589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97376763 97376894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4974 nt):
ATGTCGTCAGTGGGGAAGGTGACCCAGGTTCCGAATGGGAAAGCCTACCAGCAGATCTTCCAGGCTGAGG
TGCAGCTGGTCCACTCCCTGGCGGCCACCAGGAAGCGGGCTGCAGAGCGTTCTGTGACCCTGAAGAGTGG
CAGGATACCCATGATGAAGAAGGTGGAGACTCCTGAAGGGGAGGTGATGTCTCCCCGACAGCAGAAGTGG
ATGCACAGCCTCCCCAACGACTGGATCATGGAAAACCCTGTTCTCCACAGGGAAAAGGAAAGAGCCAAGA
GGGAAAAAGCCCGAGAGAGTGAGAACACCATCGCTGCCCGAGAAGTGCGGGGTCTCATGGATACTATAGT
TCCTGAGAAGATAAGCACCAGCACCTTTCAAAGGCAAGCAGAACACAAGAGGAAGAGCTACGAGAGCGCT
CTGGCCAGCTTTCAGGAGGAGATTGCGCAGGTGGGAAAGGAAATGGAACCTCTCATCGTGGACACAGGGG
GACTTTTTTTGAAGAAGCTGACTGAGTCTGATGAAGAAATGAACCGTCTCTTCCTAAAGGTGGAAAATGA
CACCAACCTTGAGGACTACACCATCCAAGCCCTGCTGGAGCTGTGGGATAAGGTGGCCGGGCGGTTACTG
CTCCGGAAGCAGGAGATTAAGGAGCTGGATGAGGCCCTGCACTCGCTGGAGTTCTCCCGAACCGATAAAC
TAAAAAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTTCCTACCTCATGCGGCCCGAAGTGTA
CAGGCTGATAAATGAAGAAGCCATGGTCATGAACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAG
CTGTTTGTCAACCTGATGGAGTCCACCCTGCAGCAGGAGCTGGACAGCCGCCACCGCTGGCAAGGCTTGG
TGGACACCTGGAAGGCTCTCAAGAAGGAGGCCCTGCTGCAGAGTTTCAGTGAGTTCATGGCCAGTGAGAG
TATCCATACTCCCCCGGCTGTGACGAAGGAGCTAGAGGTCATGCTGAAGACCCAGAACGTCCTGCAGCAA
AGGCGGCTGAAGCATCTCTGCACCATCTGTGACCTCCTGCCCCCCAGTTACAGCAAAACTCAGCTGACTG
AGTGGCATTCTTCCCTCAACTCCCTGAACAAGGAGCTAGACACCTACCACGTGGACTGCATGATGCGGAT
CCGCCTGCTGTATGAGAAGACATGGCAGGAGTGCCTGATGCATGTGCAGAATTGTAAGAAGCAGCTGCTG
GACTGGAAAGCCTTCACTGAGGAGGAGGCAGAGACCCTGGTGAACCAGTTCTTCTTCCAGATGGTGGGAG
CACTCCAGGGCAAAGTGGAGGAGGACCTGGAGCTCTTGGACAAATCCTTCGAGACTCTGGCAGATCAGAC
AGAGTGGCAGAGTTCACACCTCTTCAAGTATTTCCAGGAGGTGGTACAACTGTGGGAGGCACACCAGAGC
GAGCTGTTGGTGCAGGAGCTGGAGCTGGAGAAGAGGATGGAGCAGCACCGGCAGAAGCACAGCCTGGAGA
GCCAGGTGCAGGAGGCCCACCTCGATAGGCTCTTGGACCAACTGAGGCAGCAAAGTGACAAAGAAACACT
GGCGTTTCACCTGGAAAAGGTCAAAGATTATCTGAAGAACATGAAATCCAGGTATGAATGTTTTCACACC
CTCCTGACAAAGGAAGTGATGGAGTACCCAGCGATCATGCTGAAAGAACTCAACTCCTACAGCTCTGCCC
TCAGCCAATACTTCTTTGTGCGTGAAATCTTTGAACAGAACTTGGCTGGAGAAGTCATTTTCAAATTCAG
GCAACCAGAAGCACATGAAAAACCCTCCCAGAAGAGAGTGAAAAAACTGAGGAAGAAGCAAGGGTCTAAA
GAGGACATGACCAGAAGTGAGGAAAGCATAAGTAGTGGGACAAGTACTGCCAGGTCAGTAGAAGAGGTGG
AAGAAGAAAACGATCAAGAAATGGAGTCCTTCATAACTGAAGAGGTGCTGGGGCAGCAGAAAAAATCTCC
ACTGCATGCTAAGATGGATGAGTCCAAAGAAGGCTCTATTCAGGGACTGGAAGAAATGCAGGTTGAAAGA
GAGGGCTCCTTAAACCCATCCCTGAATGAGGAGAATGTGAAGGGTCAAGGAGAAAAGAAGGAGGAGTCAG
AGGAGGAAGATGAGAAGGAGGAAGAGGAGGAGGAGGAGAAGCTGGAGGAAGAGAAGGAGGAGAAGGAGGC
ACAGGAAGAGCAAGAGAGTTTATCTGTGGGTGAGGAAGAAGACAAGGAAGAGGGTCTAGAGGAGATATAC
TATGAGGACATGGAGTCCTTCACAATCTCCAGTGGAAACACTTATTTTGTCTTTGTACCCCTGGAAGAAG
AGCATTGTAGGAAGTCCCATTCCACCTTCTCAGCCATGTTCATCAACGACACTTCCAGTGCCAAGTTCAT
AGAACAAGTGACAATTCCATCGAGACTAATTTTAGAAATTAAGAAACAACTTCGAGCTGGCTTCTTCGAG
CACCTTGAGAAGTGGTTTGACCAGTGTTCCCTCAACACCCGGGTCACCGTGGCCACCAAAATCAATGAGC
TGGATTCAGAACTGGAGCTGCATCTGCACCTGCACCAGCCAAGAGCCCAGCAGATTGAAAAAGACATCCA
CAACGTCAGGGCAGCCGAGCTTTTGCTTCATCAAGAGCAGTTGGACAGCCACTGTGCTGGGGTGACCGAG
ACGCTGAAGAAGAAGCGGCTGATGTTCTGCCAGTTCCAAGAAGAGCAAAACGTGAGGAGCAAAAACTTCC
GCCTTAAGATCTATGACATGGAGCACATCTTCTTGAATGCCACCAGGAGCCAAAAGCTGGTCACTCTCAG
CAACACACTGCACCAGGAGTTGCTTAGCTATGTTGATGTCACCCAGGTGTCCCTGCGCAGCTTCCGGCAG
TACTTGGAGGAGAGTCTGGGCAAACTCCGCTACTCAAATATTGAGTTCATCAAACACTGCAGATTGTTTT
CAGAGGGAGGCAACTTTTCTCCTAAAGAAATCAATTCACTGTGTTCCCGACTGGAGAAGGAAGCTGCCCG
GATAGAGTTGGTTGAAAGTGTCATCATGCTCAACATGGAGAAGTTGGAGAATGAGTACCTGGACCAGGCC
AATGATGTCATCAACAAGTTTGAAAGCAAATTCCATAACCTGTCTGTGGACCTTATTTTCATAGAGAAAA
TCCAGCGGTTGCTGACGAATCTGCAAGTGAAAATCAAGTGCCAGGTGGCAAAATCCAATTCGCAAACAAA
TGGATTAAATTTCTCTCTGCAACAGCTTCAGAACAAGATAAAAACTTGTCAAGAGTCCAGGGGAGAGAAA
ACCACAGTGACCACAGAAGAACTCCTCAGCTTCGTCCAAACTTGGAAGGAAAAACTGAGCCAGAGGATTC
AGTACCTTAACTGCAGCCTGGACAGGGTGTCCATGACTGAACTGGTCTTTACCAACACCATCCTGAAGGA
CCAGGAGGAAGACAGTGACATCCTGACATCTTCAGAAGCCCTTGAAGAGGAGGCCAAGCTGGACGTGGTC
ACCCCTGAGTCCTTCACCCAGCTGAGCCGCGTGGGGAAGCCCCTGATTGAGGACCCAGCTGTGGATGTGA
TCAGGAAGCTCCTGCAACTTCCCAACACAAAATGGCCAACCCACCATTGTGACAAAGATCCGTCCCAGAC
AGGTAGAGGCGCATGGGCCTGTGGGTCTCGGGGCAGCAGTGAGGCAGGGGCTGGTGGTGCTGTGTGCTCA
CCTCCTGTCCTCTGCTCCTGTCCTGGGCCCTCGTCACCCAAAGGCTTCAAGCGACATCGGTGCCAGCCAG
AAAACTCTGGGAAGAAGGCTGTACCCAGTGCCAGTGCTACCTCTGCAGGCAGCTTCACACCGCACCCCAA
GCCCAACAAAATGGAGAGAAAGTACCGGGTGCTTGGGGACAAGCCTCCCCCTGCTGCCGAGGATTTTAAG
GGGATCATCTTGACCCTCCTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGAGTTCTACCGTA
AAGAAAAACGCCCAGTCACCAGGCCTGACTGCATGTGTGACACCTTTGACCAGTGCGCCGAGAACATTAG
CAAAAAGATCCTGGAGTATCAGAGCCAGGCAAATAAGTACCACAACTCCTGCCTCATAGAATTACGGATC
CAGATCAGGAGATTTGAGGAGCTGCTGCCCCAAGTGTGTTGGCTGGTGATGGAGAATTTCAAGGAACACC
ACTGGAAAAAGTTTTTCACCTCTGTGAAGGAGATCCGAGGACAGTTCGAGGAACAGCAGAAGCGGCTGGA
GAAAAGAAAGGACAAAAATGCCCAGAAGCTCCATCTAAATCTTGGACACCCCGTACATTTCCAAGAAATG
GAGTCTCTACACTTAAGTGAAGAGGAAAGGCAGGAAGAGCTGGACAGCATGATTAGGATGAACAAGGAGA
AGCTGGAGGAATGTACCAGAAGGAATGGCCAGGTTTTCATAACCAACTTGGCCACCTTCACCGAGAAGTT
CCTACTGCAGTTGGATGAGGTGGTCACCATTGACGATGTCCAGGTTGCAAGGATGGAGCCCCCCAAACAG
AAATTATCAATGCTCATACGAAGGAAACTCGCTGGGCTCTCCCTGAAGGAAGAGAGTGAGAAACCCCTGA
TTGAACGTGGAAGCAGGAAGTGGCCAGGGATCAAACCCACCGAAGTCACCATCCAAAACAAGATTCTTCT
CCAGCCAACATCATCGATTTCCACCACCAAAACCACCCTGGGCCACCTGGCGGCCGTGGAAGCCCGAGAT
GCTGTGTACCTGAAATATTTAGCATCATTTGAGGAGGAGCTAAAGAGGATCCAGGATGACTGTACATCTC
AGATAAAGGAGGCTCAGCGCTGGAAGGACAGCTGGAAGCAGTCCCTGCACACTATCCAAGGCCTGTATGT
GTGA

Translation (1657 aa):
MSSVGKVTQVPNGKAYQQIFQAEVQLVHSLAATRKRAAERSVTLKSGRIPMMKKVETPEGEVMSPRQQKW
MHSLPNDWIMENPVLHREKERAKREKARESENTIAAREVRGLMDTIVPEKISTSTFQRQAEHKRKSYESA
LASFQEEIAQVGKEMEPLIVDTGGLFLKKLTESDEEMNRLFLKVENDTNLEDYTIQALLELWDKVAGRLL
LRKQEIKELDEALHSLEFSRTDKLKSVLKKYAEVIEKTSYLMRPEVYRLINEEAMVMNYALLGNRKALAQ
LFVNLMESTLQQELDSRHRWQGLVDTWKALKKEALLQSFSEFMASESIHTPPAVTKELEVMLKTQNVLQQ
RRLKHLCTICDLLPPSYSKTQLTEWHSSLNSLNKELDTYHVDCMMRIRLLYEKTWQECLMHVQNCKKQLL
DWKAFTEEEAETLVNQFFFQMVGALQGKVEEDLELLDKSFETLADQTEWQSSHLFKYFQEVVQLWEAHQS
ELLVQELELEKRMEQHRQKHSLESQVQEAHLDRLLDQLRQQSDKETLAFHLEKVKDYLKNMKSRYECFHT
LLTKEVMEYPAIMLKELNSYSSALSQYFFVREIFEQNLAGEVIFKFRQPEAHEKPSQKRVKKLRKKQGSK
EDMTRSEESISSGTSTARSVEEVEEENDQEMESFITEEVLGQQKKSPLHAKMDESKEGSIQGLEEMQVER
EGSLNPSLNEENVKGQGEKKEESEEEDEKEEEEEEEKLEEEKEEKEAQEEQESLSVGEEEDKEEGLEEIY
YEDMESFTISSGNTYFVFVPLEEEHCRKSHSTFSAMFINDTSSAKFIEQVTIPSRLILEIKKQLRAGFFE
HLEKWFDQCSLNTRVTVATKINELDSELELHLHLHQPRAQQIEKDIHNVRAAELLLHQEQLDSHCAGVTE
TLKKKRLMFCQFQEEQNVRSKNFRLKIYDMEHIFLNATRSQKLVTLSNTLHQELLSYVDVTQVSLRSFRQ
YLEESLGKLRYSNIEFIKHCRLFSEGGNFSPKEINSLCSRLEKEAARIELVESVIMLNMEKLENEYLDQA
NDVINKFESKFHNLSVDLIFIEKIQRLLTNLQVKIKCQVAKSNSQTNGLNFSLQQLQNKIKTCQESRGEK
TTVTTEELLSFVQTWKEKLSQRIQYLNCSLDRVSMTELVFTNTILKDQEEDSDILTSSEALEEEAKLDVV
TPESFTQLSRVGKPLIEDPAVDVIRKLLQLPNTKWPTHHCDKDPSQTGRGAWACGSRGSSEAGAGGAVCS
PPVLCSCPGPSSPKGFKRHRCQPENSGKKAVPSASATSAGSFTPHPKPNKMERKYRVLGDKPPPAAEDFK
GIILTLLWESSENLLTVAEEFYRKEKRPVTRPDCMCDTFDQCAENISKKILEYQSQANKYHNSCLIELRI
QIRRFEELLPQVCWLVMENFKEHHWKKFFTSVKEIRGQFEEQQKRLEKRKDKNAQKLHLNLGHPVHFQEM
ESLHLSEEERQEELDSMIRMNKEKLEECTRRNGQVFITNLATFTEKFLLQLDEVVTIDDVQVARMEPPKQ
KLSMLIRRKLAGLSLKEESEKPLIERGSRKWPGIKPTEVTIQNKILLQPTSSISTTKTTLGHLAAVEARD
AVYLKYLASFEEELKRIQDDCTSQIKEAQRWKDSWKQSLHTIQGLYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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